Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PAC42_RS09970 Genome accession   NZ_CP097560
Coordinates   2105072..2105401 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain C4.2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2100072..2110401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAC42_RS09955 (PAC42_09945) - 2100700..2101662 (+) 963 WP_058017412.1 UDP-glucose 4-epimerase family protein -
  PAC42_RS09960 (PAC42_09950) - 2101662..2102699 (+) 1038 WP_058017424.1 MraY family glycosyltransferase -
  PAC42_RS09965 (PAC42_09955) - 2102884..2104881 (+) 1998 WP_057388198.1 polysaccharide biosynthesis protein -
  PAC42_RS09970 (PAC42_09960) comEA/comE1 2105072..2105401 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  PAC42_RS09980 (PAC42_09970) - 2105618..2106814 (-) 1197 WP_033942683.1 amino acid aminotransferase -
  PAC42_RS09985 (PAC42_09975) uvrB 2107002..2109014 (+) 2013 WP_058017413.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=595401 PAC42_RS09970 WP_003091430.1 2105072..2105401(+) (comEA/comE1) [Pseudomonas aeruginosa strain C4.2]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=595401 PAC42_RS09970 WP_003091430.1 2105072..2105401(+) (comEA/comE1) [Pseudomonas aeruginosa strain C4.2]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAACAGGTCAATATCAACACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385