Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K3758_RS10590 Genome accession   NZ_CP081126
Coordinates   2149708..2150235 (+) Length   175 a.a.
NCBI ID   WP_259944585.1    Uniprot ID   -
Organism   Sulfitobacter sp. W002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2144708..2155235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3758_RS10575 (K3758_10530) - 2145977..2148067 (+) 2091 WP_259944579.1 ABC transporter ATP-binding protein -
  K3758_RS10580 (K3758_10535) - 2148175..2148702 (-) 528 WP_259944581.1 hypothetical protein -
  K3758_RS10585 (K3758_10540) - 2148882..2149427 (-) 546 WP_120352218.1 lytic transglycosylase domain-containing protein -
  K3758_RS10590 (K3758_10545) ssb 2149708..2150235 (+) 528 WP_259944585.1 single-stranded DNA-binding protein Machinery gene
  K3758_RS10595 (K3758_10550) aroB 2150531..2151646 (-) 1116 WP_259944586.1 3-dehydroquinate synthase -
  K3758_RS10600 (K3758_10555) - 2151639..2152196 (-) 558 WP_259944588.1 shikimate kinase -
  K3758_RS10605 (K3758_10560) - 2152316..2152465 (+) 150 WP_007120408.1 hypothetical protein -
  K3758_RS10610 (K3758_10565) - 2152471..2154123 (+) 1653 WP_311201511.1 hypothetical protein -
  K3758_RS10615 (K3758_10570) - 2154120..2155103 (+) 984 WP_120351225.1 site-specific tyrosine recombinase XerD -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 17831.37 Da        Isoelectric Point: 5.2704

>NTDB_id=595326 K3758_RS10590 WP_259944585.1 2149708..2150235(+) (ssb) [Sulfitobacter sp. W002]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFQEGLVRVAEQYLKKGSKVYI
EGQLQTRKWQDQSGADRYSTEVVLQGFGGTLTMLDGPGGGSGGGGGGGYGGGGGGGYGGGGNDYGGGYDSGPSSSGGGGG
GGGGGSRDLDDEIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=595326 K3758_RS10590 WP_259944585.1 2149708..2150235(+) (ssb) [Sulfitobacter sp. W002]
ATGGCCGGCTCAGTGAACAAAGTGATCCTTATCGGCAACCTCGGGCGCGACCCCGAGGTGAGGTCGTTCCAGAACGGCGG
CAAAGTGTGCAACCTGCGCATTGCCACCTCGGAGACATGGAAAGACCGCAACACCGGCGAGCGCCGCGAGAAGACCGAAT
GGCATTCGGTGGCGATCTTTCAAGAAGGGCTCGTCCGCGTGGCCGAGCAATACCTCAAGAAGGGCTCCAAAGTGTATATC
GAGGGCCAGTTGCAGACCCGCAAATGGCAGGACCAATCCGGCGCAGACCGCTATAGCACCGAAGTCGTGCTGCAAGGCTT
TGGGGGCACGCTGACCATGCTCGACGGTCCCGGCGGTGGCTCCGGCGGCGGTGGTGGCGGCGGCTACGGTGGTGGCGGCG
GTGGCGGCTACGGCGGTGGCGGAAATGACTACGGCGGCGGCTATGACAGCGGCCCGTCCTCTTCGGGCGGCGGCGGCGGT
GGCGGCGGTGGCGGCAGCCGCGATCTCGATGACGAGATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.445

98.857

0.509
  ssb Glaesserella parasuis strain SC1401

46.237

100

0.491
  ssb Neisseria meningitidis MC58

40.11

100

0.417
  ssb Neisseria gonorrhoeae MS11

40.11

100

0.417