Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K3756_RS09175 Genome accession   NZ_CP081120
Coordinates   1811701..1812228 (+) Length   175 a.a.
NCBI ID   WP_259986844.1    Uniprot ID   -
Organism   Sulfitobacter sp. S190     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1806701..1817228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3756_RS09160 (K3756_09135) - 1808168..1810261 (+) 2094 WP_259986840.1 ABC transporter ATP-binding protein -
  K3756_RS09165 (K3756_09140) - 1810325..1810738 (-) 414 WP_259986841.1 hypothetical protein -
  K3756_RS09170 (K3756_09145) - 1810895..1811494 (-) 600 WP_259986842.1 lytic transglycosylase domain-containing protein -
  K3756_RS09175 (K3756_09150) ssb 1811701..1812228 (+) 528 WP_259986844.1 single-stranded DNA-binding protein Machinery gene
  K3756_RS09180 (K3756_09155) - 1812280..1812564 (+) 285 WP_259986846.1 hypothetical protein -
  K3756_RS09185 (K3756_09160) aroB 1812561..1813667 (-) 1107 WP_259986849.1 3-dehydroquinate synthase -
  K3756_RS09190 (K3756_09165) - 1813660..1814244 (-) 585 WP_259986851.1 shikimate kinase -
  K3756_RS09195 (K3756_09170) - 1814326..1814475 (+) 150 WP_259986854.1 hypothetical protein -
  K3756_RS09200 (K3756_09175) - 1814573..1816039 (+) 1467 WP_259986856.1 hypothetical protein -
  K3756_RS09205 (K3756_09180) - 1816036..1816974 (+) 939 WP_259986858.1 tyrosine recombinase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18421.97 Da        Isoelectric Point: 5.0178

>NTDB_id=595318 K3756_RS09175 WP_259986844.1 1811701..1812228(+) (ssb) [Sulfitobacter sp. S190]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERKEKTEWHSVAIFQEGLVRIAEQYLRKGSKVYI
EGQLQTRKWQDQSGADRYSTEVVLQGYGGTLTMLDGRDGQSGGGGGGYGGGQGGGYDDRGAGGGYDSGGDYGGGQSSGGN
QGGGGSRDLDDEIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=595318 K3756_RS09175 WP_259986844.1 1811701..1812228(+) (ssb) [Sulfitobacter sp. S190]
ATGGCCGGCTCAGTGAACAAAGTGATCCTCATCGGCAATTTGGGGCGTGACCCTGAAGTGCGCAGCTTTCAAAATGGTGG
CAAGGTCTGCAACCTGCGCATCGCGACCTCCGAGACGTGGAAAGACCGCAACACCGGCGAACGCAAGGAAAAGACCGAGT
GGCACTCCGTTGCCATTTTTCAGGAAGGCCTTGTCCGGATTGCGGAGCAGTACCTGCGCAAAGGCAGCAAAGTGTATATC
GAAGGCCAGTTGCAGACCCGCAAGTGGCAGGATCAATCCGGTGCAGACCGCTATTCCACCGAAGTTGTGCTTCAGGGGTA
CGGTGGTACGCTGACGATGCTCGACGGGCGTGATGGCCAAAGCGGCGGCGGTGGCGGCGGCTACGGTGGTGGCCAGGGCG
GTGGTTACGATGACCGCGGTGCCGGTGGTGGCTACGATTCGGGTGGTGACTACGGCGGCGGTCAATCGTCGGGTGGCAAC
CAGGGTGGCGGCGGATCGCGCGATCTGGATGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.335

98.857

0.537
  ssb Glaesserella parasuis strain SC1401

45.833

100

0.503
  ssb Neisseria gonorrhoeae MS11

41.899

100

0.429
  ssb Neisseria meningitidis MC58

41.899

100

0.429