Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K3740_RS07305 Genome accession   NZ_CP081103
Coordinates   1468789..1469274 (-) Length   161 a.a.
NCBI ID   WP_010439606.1    Uniprot ID   -
Organism   Ruegeria conchae strain M340     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1463789..1474274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3740_RS07280 (K3740_07265) - 1464251..1465777 (-) 1527 WP_170778888.1 hypothetical protein -
  K3740_RS07285 (K3740_07270) - 1465767..1465916 (-) 150 WP_010439599.1 hypothetical protein -
  K3740_RS07290 (K3740_07275) - 1465996..1466583 (+) 588 WP_260025841.1 shikimate kinase -
  K3740_RS07295 (K3740_07280) aroB 1466583..1467692 (+) 1110 WP_260025844.1 3-dehydroquinate synthase -
  K3740_RS07300 (K3740_07285) - 1467700..1468770 (-) 1071 WP_260025846.1 site-2 protease family protein -
  K3740_RS07305 (K3740_07290) ssb 1468789..1469274 (-) 486 WP_010439606.1 single-stranded DNA-binding protein Machinery gene
  K3740_RS07310 (K3740_07295) - 1469482..1470060 (+) 579 WP_010439608.1 lytic transglycosylase domain-containing protein -
  K3740_RS07315 (K3740_07300) - 1470157..1471119 (+) 963 WP_260025851.1 LuxR C-terminal-related transcriptional regulator -
  K3740_RS07320 (K3740_07305) - 1471248..1472234 (+) 987 WP_260025853.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17141.87 Da        Isoelectric Point: 5.2795

>NTDB_id=595283 K3740_RS07305 WP_010439606.1 1468789..1469274(-) (ssb) [Ruegeria conchae strain M340]
MAGSVNKVILVGNLGRDPEVRTFQNGGKVCNLRIATSETWKDRNTGERRERTEWHSVAIFNEGLVRVAEQYLRKGSKIYV
EGQLQTRKWQDQSGQDRYSTEVVLQGFGSTLVMLDARGEGGGGGGGYGGGQAGGGYGDPYGGPSSAPAPASGGIDDDEIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=595283 K3740_RS07305 WP_010439606.1 1468789..1469274(-) (ssb) [Ruegeria conchae strain M340]
ATGGCGGGTTCAGTCAACAAGGTCATTCTGGTCGGCAATCTGGGCCGCGATCCTGAAGTGCGGACATTTCAAAACGGTGG
TAAAGTATGCAACCTGCGCATTGCCACCTCGGAAACCTGGAAGGACCGCAATACCGGAGAGCGCCGTGAACGGACAGAAT
GGCACTCGGTCGCCATATTCAACGAAGGCCTTGTACGCGTGGCTGAACAGTATCTGCGCAAGGGTTCAAAAATTTACGTC
GAGGGACAATTGCAGACCCGTAAGTGGCAGGATCAGTCCGGTCAGGATCGTTATTCGACCGAGGTGGTGCTGCAGGGCTT
CGGCTCGACGCTGGTAATGCTCGACGCCCGCGGTGAAGGCGGCGGCGGTGGAGGCGGCTATGGCGGCGGACAAGCCGGCG
GCGGATATGGCGACCCATATGGCGGCCCCTCCAGCGCACCAGCCCCTGCGTCTGGCGGAATCGACGATGACGAGATTCCG
TTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.151

100

0.602
  ssb Vibrio cholerae strain A1552

50.568

100

0.553
  ssb Neisseria meningitidis MC58

41.899

100

0.466
  ssb Neisseria gonorrhoeae MS11

41.899

100

0.466