Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K3726_RS09700 Genome accession   NZ_CP081090
Coordinates   1977576..1978097 (+) Length   173 a.a.
NCBI ID   WP_260027535.1    Uniprot ID   -
Organism   Leisingera caerulea strain S216     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1972576..1983097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3726_RS09685 (K3726_09665) - 1973748..1975838 (+) 2091 WP_027237440.1 ABC transporter ATP-binding protein -
  K3726_RS09690 (K3726_09670) - 1976229..1976603 (-) 375 WP_260027534.1 hypothetical protein -
  K3726_RS09695 (K3726_09675) - 1976759..1977343 (-) 585 WP_259972642.1 lytic transglycosylase domain-containing protein -
  K3726_RS09700 (K3726_09680) ssb 1977576..1978097 (+) 522 WP_260027535.1 single-stranded DNA-binding protein Machinery gene
  K3726_RS09705 (K3726_09685) - 1978479..1980686 (+) 2208 WP_260027536.1 methyl-accepting chemotaxis protein -
  K3726_RS09710 (K3726_09690) aroB 1980780..1981886 (-) 1107 WP_259956573.1 3-dehydroquinate synthase -
  K3726_RS09715 (K3726_09695) - 1981886..1982476 (-) 591 WP_259956574.1 shikimate kinase -
  K3726_RS09720 (K3726_09700) - 1982558..1982707 (+) 150 WP_167332331.1 hypothetical protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18038.60 Da        Isoelectric Point: 5.7840

>NTDB_id=595281 K3726_RS09700 WP_260027535.1 1977576..1978097(+) (ssb) [Leisingera caerulea strain S216]
MAGSLNKVMLIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAVFSEGLVRVCEQYLRKGSKVYV
EGQLQTRKWQDQSGQDRYSTEVVLQGFGSTLTMLDGRGEGGGGGGQSGGGYGGGSQGGGGYGGGYDGGSQGGGSGGGYGG
GASHNIDDDEIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=595281 K3726_RS09700 WP_260027535.1 1977576..1978097(+) (ssb) [Leisingera caerulea strain S216]
ATGGCCGGCTCACTCAACAAAGTCATGCTCATCGGCAACCTGGGCCGCGACCCCGAGGTGCGCAGTTTTCAGAACGGCGG
CAAGGTCTGCAACCTCCGCATCGCCACGTCGGAAACCTGGAAGGACCGCAACACCGGCGAGCGCCGCGAAAAGACTGAAT
GGCATTCCGTGGCGGTCTTCAGCGAAGGTCTGGTCCGGGTTTGCGAACAGTATCTGCGCAAAGGTTCCAAGGTTTACGTC
GAAGGCCAGCTGCAGACCCGCAAATGGCAGGATCAAAGCGGTCAGGACCGCTATTCCACTGAGGTGGTGCTGCAGGGCTT
CGGCTCCACCCTGACCATGCTTGACGGCCGCGGCGAGGGCGGCGGCGGCGGCGGCCAGAGCGGCGGCGGCTATGGCGGCG
GCAGCCAGGGCGGCGGCGGGTACGGCGGCGGCTATGACGGCGGTTCCCAAGGCGGCGGCAGCGGCGGCGGGTACGGCGGC
GGTGCCTCGCATAATATCGACGACGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.705

100

0.526
  ssb Glaesserella parasuis strain SC1401

48.387

100

0.52
  ssb Neisseria meningitidis MC58

41.111

100

0.428
  ssb Neisseria gonorrhoeae MS11

41.111

100

0.428