Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K3722_RS09840 Genome accession   NZ_CP081078
Coordinates   1966350..1966871 (+) Length   173 a.a.
NCBI ID   WP_027237437.1    Uniprot ID   A0A9Q9LY89
Organism   Leisingera caerulea strain S141     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1961350..1971871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3722_RS09825 (K3722_09815) - 1962523..1964613 (+) 2091 WP_027237440.1 ABC transporter ATP-binding protein -
  K3722_RS09830 (K3722_09820) - 1965003..1965377 (-) 375 WP_027237439.1 hypothetical protein -
  K3722_RS09835 (K3722_09825) - 1965533..1966117 (-) 585 WP_259972642.1 lytic transglycosylase domain-containing protein -
  K3722_RS09840 (K3722_09830) ssb 1966350..1966871 (+) 522 WP_027237437.1 single-stranded DNA-binding protein Machinery gene
  K3722_RS09845 (K3722_09835) - 1967254..1969461 (+) 2208 WP_259999983.1 methyl-accepting chemotaxis protein -
  K3722_RS09850 (K3722_09840) aroB 1969555..1970661 (-) 1107 WP_259999985.1 3-dehydroquinate synthase -
  K3722_RS09855 (K3722_09845) - 1970661..1971251 (-) 591 WP_259956574.1 shikimate kinase -
  K3722_RS09860 (K3722_09850) - 1971333..1971482 (+) 150 WP_167332331.1 hypothetical protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18068.62 Da        Isoelectric Point: 5.7840

>NTDB_id=595268 K3722_RS09840 WP_027237437.1 1966350..1966871(+) (ssb) [Leisingera caerulea strain S141]
MAGSLNKVMLIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAVFSEGLVRVCEQYLRKGSKVYV
EGQLQTRKWQDQSGQDRYSTEVVLQGFGSTLTMLDGRGEGGGGGGQSGGGYGGGSQGGGGYGGGYDSGSQGGGSGGGYGG
GASHNIDDDEIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=595268 K3722_RS09840 WP_027237437.1 1966350..1966871(+) (ssb) [Leisingera caerulea strain S141]
ATGGCCGGCTCACTCAACAAAGTCATGCTCATCGGCAACCTGGGCCGCGACCCCGAGGTGCGCAGTTTTCAGAACGGCGG
CAAGGTCTGCAACCTGCGCATCGCCACGTCGGAAACCTGGAAGGACCGCAACACCGGCGAGCGCCGCGAAAAGACTGAAT
GGCATTCCGTGGCGGTCTTCAGCGAAGGTCTGGTCCGGGTTTGCGAACAGTATCTGCGCAAAGGTTCCAAGGTTTACGTC
GAAGGCCAGCTGCAGACCCGCAAATGGCAGGATCAAAGCGGTCAGGACCGCTATTCCACTGAGGTGGTGCTGCAGGGCTT
CGGCTCCACCCTGACCATGCTTGACGGCCGCGGCGAGGGCGGCGGCGGCGGCGGCCAGAGCGGTGGCGGCTATGGCGGCG
GCAGCCAGGGCGGCGGCGGGTACGGCGGCGGCTATGACAGCGGCTCCCAAGGCGGCGGCAGCGGCGGCGGGTACGGCGGC
GGTGCCTCGCATAATATCGACGACGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.273

100

0.532
  ssb Glaesserella parasuis strain SC1401

47.059

100

0.509
  ssb Neisseria gonorrhoeae MS11

41.667

100

0.434
  ssb Neisseria meningitidis MC58

41.667

100

0.434