Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K3557_RS09530 Genome accession   NZ_CP081036
Coordinates   1930895..1931428 (+) Length   177 a.a.
NCBI ID   WP_259999340.1    Uniprot ID   -
Organism   Leisingera sp. M523     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1925895..1936428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3557_RS09515 (K3557_09445) - 1927939..1929372 (-) 1434 WP_259999334.1 sulfotransferase -
  K3557_RS09520 (K3557_09450) - 1929585..1929959 (-) 375 WP_259999336.1 hypothetical protein -
  K3557_RS09525 (K3557_09455) - 1930077..1930661 (-) 585 WP_259999338.1 lytic transglycosylase domain-containing protein -
  K3557_RS09530 (K3557_09460) ssb 1930895..1931428 (+) 534 WP_259999340.1 single-stranded DNA-binding protein Machinery gene
  K3557_RS20580 - 1931729..1931845 (+) 117 Protein_1871 IS3 family transposase -
  K3557_RS20585 (K3557_09470) - 1932083..1932247 (+) 165 WP_409201209.1 transposase -
  K3557_RS09540 (K3557_09475) - 1932662..1934065 (-) 1404 WP_259999342.1 TRAP transporter large permease -
  K3557_RS09545 (K3557_09480) - 1934071..1934721 (-) 651 WP_129370679.1 TRAP transporter small permease subunit -
  K3557_RS09550 (K3557_09485) - 1934803..1935819 (-) 1017 WP_259999344.1 C4-dicarboxylate TRAP transporter substrate-binding protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18472.01 Da        Isoelectric Point: 5.2733

>NTDB_id=595224 K3557_RS09530 WP_259999340.1 1930895..1931428(+) (ssb) [Leisingera sp. M523]
MAGSLNKVMLIGNLGRDPEVRSFQNGGKVCNLRIATSENWKDRNTGERRERTEWHSVAIFSEGLVRVAEQYLRKGSKVYI
EGQLQTRKWQDQSGQDRYSTEIVLQGFGSTLTMLDGRGEGGGGQDGGGGGGYGGGSQGGGYGGGYDSGQQGGSGGAGGGG
NFGGGASHNIDDDEIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=595224 K3557_RS09530 WP_259999340.1 1930895..1931428(+) (ssb) [Leisingera sp. M523]
ATGGCCGGCTCTCTTAATAAAGTCATGCTCATCGGCAATCTGGGCCGCGACCCGGAGGTGCGCAGCTTCCAGAACGGCGG
CAAGGTGTGCAACCTGCGCATTGCCACCTCGGAAAACTGGAAGGACCGCAACACCGGTGAACGCCGCGAGCGGACCGAGT
GGCACTCTGTGGCCATCTTCAGCGAAGGTCTTGTGCGCGTTGCCGAGCAGTATCTGCGCAAAGGCTCCAAGGTCTATATC
GAAGGCCAGCTGCAGACCCGCAAATGGCAGGACCAAAGCGGCCAGGACCGGTATTCGACCGAAATCGTCCTGCAAGGCTT
CGGCTCCACCCTGACCATGCTTGACGGCCGCGGTGAAGGCGGCGGCGGCCAGGACGGTGGCGGTGGCGGCGGTTATGGCG
GCGGCAGCCAGGGCGGCGGTTACGGCGGCGGTTATGACAGCGGCCAGCAAGGCGGCAGCGGCGGTGCTGGTGGCGGCGGC
AATTTCGGCGGCGGCGCGTCCCATAACATCGATGACGACGAAATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.644

100

0.514
  ssb Vibrio cholerae strain A1552

49.432

99.435

0.492
  ssb Neisseria gonorrhoeae MS11

41.667

100

0.424
  ssb Neisseria meningitidis MC58

41.667

100

0.424