Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M8G39_RS03985 Genome accession   NZ_CP097383
Coordinates   821684..822181 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain L00-a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 816684..827181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8G39_RS03970 (M8G39_03970) bfr 816692..817156 (+) 465 WP_003093668.1 bacterioferritin -
  M8G39_RS03975 (M8G39_03975) uvrA 817228..820065 (-) 2838 WP_033938966.1 excinuclease ABC subunit UvrA Machinery gene
  M8G39_RS03980 (M8G39_03980) - 820279..821667 (+) 1389 WP_003103910.1 MFS transporter -
  M8G39_RS03985 (M8G39_03985) ssb 821684..822181 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  M8G39_RS03990 (M8G39_03990) pchA 822270..823700 (-) 1431 WP_023099164.1 isochorismate synthase PchA -
  M8G39_RS03995 (M8G39_03995) pchB 823697..824002 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  M8G39_RS04000 (M8G39_04000) pchC 824002..824757 (-) 756 WP_023091007.1 pyochelin biosynthesis editing thioesterase PchC -
  M8G39_RS04005 (M8G39_04005) pchD 824754..826397 (-) 1644 WP_023091008.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=594834 M8G39_RS03985 WP_003114685.1 821684..822181(+) (ssb) [Pseudomonas aeruginosa strain L00-a]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=594834 M8G39_RS03985 WP_003114685.1 821684..822181(+) (ssb) [Pseudomonas aeruginosa strain L00-a]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGATGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAACAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515