Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K2O51_RS14325 Genome accession   NZ_CP080767
Coordinates   397483..398040 (+) Length   185 a.a.
NCBI ID   WP_140949317.1    Uniprot ID   -
Organism   Cupriavidus pinatubonensis strain HN-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 392483..403040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K2O51_RS14315 (K2O51_14315) uvrA 392801..395665 (-) 2865 WP_011296557.1 excinuclease ABC subunit UvrA -
  K2O51_RS14320 (K2O51_14320) - 396009..397259 (+) 1251 WP_220631251.1 MFS transporter -
  K2O51_RS14325 (K2O51_14325) ssb 397483..398040 (+) 558 WP_140949317.1 single-stranded DNA-binding protein Machinery gene
  K2O51_RS14330 (K2O51_14330) - 398265..399842 (-) 1578 WP_140949316.1 hypothetical protein -
  K2O51_RS14335 (K2O51_14335) - 400040..400471 (+) 432 WP_011296561.1 hypothetical protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 19136.86 Da        Isoelectric Point: 5.9517

>NTDB_id=594828 K2O51_RS14325 WP_140949317.1 397483..398040(+) (ssb) [Cupriavidus pinatubonensis strain HN-2]
MASINKVILVGNLGADPETRYMPSGDAVTNLRLATTDRYKDKQSGEMKEATEWHRVAMFGKLAEIAAQYLRKGSSVYIEG
KIRTRKWQDQSGQDKYSTEIVADQMQMLGGRQGAGGGGDEGGYGGGGGGGGYNRESSGGGYGGGRGQGGGGGGGGGQGGG
QQGGARRQQQAPSNGFEDMDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=594828 K2O51_RS14325 WP_140949317.1 397483..398040(+) (ssb) [Cupriavidus pinatubonensis strain HN-2]
ATGGCATCGATCAACAAAGTCATTCTCGTCGGGAATCTCGGCGCGGACCCGGAAACCCGCTACATGCCGAGCGGCGACGC
AGTGACCAACCTGCGCCTGGCGACAACCGACCGCTACAAGGACAAGCAGTCCGGCGAGATGAAGGAAGCCACTGAGTGGC
ACCGCGTCGCGATGTTCGGCAAGCTGGCCGAAATCGCCGCCCAGTACCTGCGCAAGGGTTCGTCGGTCTACATCGAAGGG
AAGATCCGCACCCGCAAGTGGCAGGACCAGAGCGGTCAGGACAAGTACAGCACCGAAATCGTTGCTGACCAGATGCAGAT
GCTGGGCGGACGCCAGGGCGCCGGCGGTGGCGGTGATGAAGGCGGCTACGGCGGCGGTGGCGGCGGTGGTGGCTACAACC
GCGAATCGTCGGGTGGCGGTTATGGCGGTGGCCGCGGCCAAGGCGGTGGCGGTGGCGGTGGCGGTGGTCAGGGCGGTGGC
CAGCAGGGCGGCGCACGCCGTCAGCAGCAGGCGCCGTCGAACGGGTTTGAGGATATGGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.785

100

0.524
  ssb Glaesserella parasuis strain SC1401

48.128

100

0.486
  ssb Neisseria meningitidis MC58

43.243

100

0.432
  ssb Neisseria gonorrhoeae MS11

42.703

100

0.427