Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   K6J57_RS03870 Genome accession   NZ_AP018770
Coordinates   756540..757547 (+) Length   335 a.a.
NCBI ID   WP_042599469.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-II-7 isolate 13H35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 751540..762547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J57_RS03845 (CHBNII7_07350) aspS 752223..753989 (+) 1767 WP_042594297.1 aspartate--tRNA ligase -
  K6J57_RS03850 (CHBNII7_07360) nudB 754011..754484 (+) 474 WP_011271985.1 dihydroneopterin triphosphate diphosphatase -
  K6J57_RS03855 (CHBNII7_07370) - 754496..755236 (+) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  K6J57_RS03860 (CHBNII7_07380) ruvC 755283..755855 (+) 573 WP_011271984.1 crossover junction endodeoxyribonuclease RuvC -
  K6J57_RS03865 (CHBNII7_07390) ruvA 755918..756532 (+) 615 WP_038440774.1 Holliday junction branch migration protein RuvA -
  K6J57_RS03870 (CHBNII7_07400) ruvB 756540..757547 (+) 1008 WP_042599469.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  K6J57_RS03875 (CHBNII7_07410) - 757599..757886 (-) 288 WP_005656308.1 DUF5339 domain-containing protein -
  K6J57_RS03880 (CHBNII7_07420) xerD 758059..758952 (-) 894 WP_005654087.1 site-specific tyrosine recombinase XerD -
  K6J57_RS03885 (CHBNII7_07430) - 758982..760148 (-) 1167 WP_021035693.1 3-phenylpropionate MFS transporter -
  K6J57_RS03890 (CHBNII7_07440) proC 760148..760963 (-) 816 WP_021035694.1 pyrroline-5-carboxylate reductase -
  K6J57_RS03895 (CHBNII7_07450) rdgC 761029..761937 (+) 909 WP_021035695.1 recombination-associated protein RdgC -
  K6J57_RS03900 (CHBNII7_07460) ruvX 761987..762406 (-) 420 WP_005686741.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37062.43 Da        Isoelectric Point: 4.8547

>NTDB_id=59482 K6J57_RS03870 WP_042599469.1 756540..757547(+) (ruvB) [Haemophilus influenzae strain CHBN-II-7 isolate 13H35]
MIEADRIISGQAKLDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
VISVNVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSKTYRHFGLQKLSD

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=59482 K6J57_RS03870 WP_042599469.1 756540..757547(+) (ruvB) [Haemophilus influenzae strain CHBN-II-7 isolate 13H35]
ATGATTGAAGCAGATAGAATTATTAGCGGGCAAGCTAAGCTTGATGAAGATGTTATCGACCGTGCTATTCGTCCTAAACT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTACGCGAGCAGATGGATATTTTCATCAAGGCAGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCTCCTGGCTTGGGAAAAACAACGCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACGACGTCAGGGCCTGTATTAGAAAAAGCGGGCGATTTGGCTGCAATGCTTACTAATCTTGAACCGCA
TGATGTGTTATTTATTGATGAAATCCATCGACTTTCCCCTGCTATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AGTTGGATATTATGATTGGCGAAGGACCCGCTGCTCGTTCCATTAAATTAGATTTGCCCCCTTTTACTTTGGTTGGTGCG
ACCACTAGAGCGGGTTCTTTGACTTCTCCATTGCGTGATCGTTTTGGTATTGTGCAACGTTTGGAATTCTATTCTGTAGA
AGATTTAACCTCTATCGTTGCAAGAAGTGCGGACTGTTTAAATCTTGAATTAGAACAACAAGCCGCTTTTGAGGTGGCTC
GTCGTTCACGAGGCACGCCTCGAATTGCAAACCGTTTATTACGACGTGTGCGTGATTATGCAGATGTACGCAATGGGGGA
GTAATTTCGGTAAATGTGGCAAAACAAGCACTTTCAATGTTGGATGTAGATGATGCTGGATTTGATTATTTAGATAGAAA
ATTGTTGTCTGCAGTTATTGAGCGTTTTGATGGTGGACCTGTGGGGCTGGATAATCTTGCTGCTGCAATTGGCGAAGAAC
GTGATACCATTGAAGATGTTTTAGAGCCTTATTTGATTCAACAGGGGTTTTTACAAAGAACGCCACGTGGACGTATTGCA
ACATCGAAAACTTATCGCCATTTCGGTCTGCAGAAATTATCAGACTAG

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

62.385

97.612

0.609
  ruvB Streptococcus pneumoniae TIGR4

58.589

97.313

0.57
  ruvB Streptococcus pneumoniae R6

58.589

97.313

0.57
  ruvB Streptococcus pneumoniae D39

58.589

97.313

0.57
  ruvB Helicobacter pylori 26695

54.952

93.433

0.513
  ruvB Synechocystis sp. PCC 6803

55.016

92.239

0.507