Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   M6G44_RS05130 Genome accession   NZ_CP097377
Coordinates   1115880..1117886 (+) Length   668 a.a.
NCBI ID   WP_237601083.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain GD2107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1110880..1122886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M6G44_RS05105 (M6G44_05105) ilvY 1111445..1112329 (-) 885 WP_005597688.1 HTH-type transcriptional activator IlvY -
  M6G44_RS05110 (M6G44_05110) - 1112330..1113370 (-) 1041 WP_012263045.1 glycosyltransferase family 9 protein -
  M6G44_RS05115 (M6G44_05115) - 1113372..1114055 (-) 684 WP_005604674.1 glycosyltransferase family 25 protein -
  M6G44_RS05120 (M6G44_05120) - 1114164..1115225 (+) 1062 WP_005612325.1 glycosyltransferase family 9 protein -
  M6G44_RS05125 (M6G44_05125) rpmE 1115287..1115499 (-) 213 WP_005597698.1 50S ribosomal protein L31 -
  M6G44_RS05130 (M6G44_05130) recP/tkt 1115880..1117886 (+) 2007 WP_237601083.1 transketolase Machinery gene
  M6G44_RS05135 (M6G44_05135) htpG 1118021..1119898 (-) 1878 WP_005617462.1 molecular chaperone HtpG -
  M6G44_RS05140 (M6G44_05140) - 1120127..1121653 (+) 1527 WP_012478468.1 catalase -
  M6G44_RS05150 (M6G44_05150) - 1121820..1122357 (+) 538 Protein_1008 IS3 family transposase -

Sequence

Protein


Download         Length: 668 a.a.        Molecular weight: 73238.75 Da        Isoelectric Point: 5.5975

>NTDB_id=594794 M6G44_RS05130 WP_237601083.1 1115880..1117886(+) (recP/tkt) [Actinobacillus pleuropneumoniae strain GD2107]
MAERKVLANAIRFLSMDAVQKANSGHPGAPMGMADIAEVLWRDFLKHNPTNPKWADRDRFVLSNGHGSMLIYSLLHLTGY
DLSIEDLKQFRQLHSKTPGHPEYGYAPGVETTTGPLGQGITNAVGMAIAEKTLAGQFNREGHKIVDHYTYAFLGDGCLME
GISHEACSLAGTLGLGKLIAFYDDNNISIDGHVDGWFSDDTAQRFEAYGWQVIRNVDGHDAEQIKFAIENAKAETERPTL
IICKTIIGYGSPNKSASHDCHGAPLGNDEIALTRKALNWEYAPFEIPAEIYAEWDAKAQGAVVEKEWNAKFAAYEAAYPE
LAAEFKRRMAGDLPANWEAESKAFIEKLQANPAAIASRKASQNAIEAYAHILPEFLGGSADLASSNLTLWSGSKPIRADH
NVDGNYINYGVREFGMSAIMNGIALHGGFISYGATFLMFYEYAHNAVRMAALMKQRSLFVYTHDSIGLGEDGPTHQPVEQ
TASLRFIPNLETWRPADQVESAVAWKAAVERKDGPSALIFTRQNLAQQTRTPEQLANVARGGYILRECCQKGGCPDLILI
ATGSEVDLAMKAAEVLDAEGTKVRVVSMPSTNVFDKQDAAYRESVLPSSVTKRVAIEAQLSDFWYKYVGFEGRIVGMNSF
GESAPADQLFKLFGFTVDNVVAKAKEIL

Nucleotide


Download         Length: 2007 bp        

>NTDB_id=594794 M6G44_RS05130 WP_237601083.1 1115880..1117886(+) (recP/tkt) [Actinobacillus pleuropneumoniae strain GD2107]
ATGGCAGAACGTAAAGTATTAGCGAATGCAATTCGCTTTCTAAGTATGGATGCGGTACAAAAAGCTAATTCCGGTCACCC
GGGCGCCCCAATGGGGATGGCGGATATCGCAGAGGTATTATGGCGCGATTTTTTAAAACACAATCCGACCAATCCTAAGT
GGGCGGATCGCGACCGTTTCGTACTTTCAAACGGCCATGGTTCAATGTTAATTTATAGCTTATTACACTTAACGGGCTAT
GATCTTTCAATTGAAGATTTAAAACAATTCCGTCAATTACATTCTAAAACACCGGGTCACCCTGAATACGGTTACGCACC
GGGTGTTGAAACCACAACCGGTCCGTTAGGCCAAGGTATTACCAATGCAGTCGGTATGGCGATTGCGGAAAAAACCTTAG
CCGGACAATTTAACCGTGAAGGTCATAAAATCGTTGATCACTATACTTACGCATTTTTAGGCGACGGCTGCTTAATGGAA
GGTATTTCACACGAAGCTTGTTCATTAGCCGGCACTTTAGGCTTAGGTAAGTTAATCGCTTTCTATGATGACAATAATAT
CTCAATCGATGGTCACGTAGATGGTTGGTTCTCTGATGATACGGCACAACGTTTTGAAGCTTATGGCTGGCAAGTTATCC
GTAATGTAGACGGTCATGATGCGGAACAAATCAAATTTGCCATTGAAAATGCAAAAGCGGAGACCGAGCGTCCGACATTA
ATTATCTGTAAAACCATTATCGGTTACGGTTCTCCGAACAAATCGGCATCGCATGACTGCCACGGTGCGCCGTTAGGTAA
TGATGAAATCGCATTAACCCGTAAAGCACTCAACTGGGAATATGCGCCGTTTGAAATTCCGGCTGAAATCTATGCGGAAT
GGGATGCCAAAGCGCAAGGTGCGGTTGTAGAAAAAGAATGGAATGCTAAATTTGCGGCTTATGAAGCGGCGTATCCTGAA
TTAGCGGCGGAATTTAAACGTCGTATGGCGGGTGATTTACCGGCAAACTGGGAAGCGGAAAGTAAAGCGTTTATTGAAAA
ATTACAAGCAAATCCGGCGGCAATCGCAAGCCGTAAAGCATCACAAAATGCGATTGAAGCTTATGCGCATATCTTACCGG
AATTCTTAGGCGGTTCTGCCGACTTAGCAAGTTCTAACTTAACCTTATGGTCAGGTTCAAAACCAATCCGTGCGGATCAT
AACGTCGATGGCAACTACATCAACTACGGTGTACGTGAATTCGGTATGTCTGCAATTATGAACGGTATTGCATTACACGG
CGGTTTTATTTCTTACGGTGCAACATTCTTAATGTTCTATGAATATGCCCACAATGCGGTGCGTATGGCGGCATTAATGA
AACAACGCTCATTATTCGTTTATACACATGATTCTATCGGTTTAGGCGAAGACGGCCCGACTCACCAACCGGTAGAACAA
ACCGCATCATTACGTTTCATTCCGAACTTAGAAACATGGCGTCCGGCTGACCAAGTGGAATCTGCTGTTGCATGGAAAGC
AGCGGTTGAACGTAAAGACGGCCCGAGTGCATTAATCTTTACTCGCCAAAATCTTGCGCAACAAACACGTACGCCGGAAC
AATTGGCAAACGTTGCTCGCGGTGGTTATATCTTACGTGAATGCTGTCAAAAAGGCGGTTGTCCGGATTTAATTCTCATC
GCAACCGGCTCAGAAGTGGATTTAGCTATGAAAGCAGCTGAAGTATTAGATGCGGAAGGTACGAAAGTACGTGTTGTTTC
CATGCCAAGTACCAATGTATTCGACAAACAAGATGCCGCATATCGTGAAAGCGTATTACCAAGCTCAGTAACCAAACGTG
TAGCAATCGAAGCACAATTATCTGATTTCTGGTACAAATACGTTGGCTTTGAAGGTCGTATCGTAGGTATGAATAGCTTC
GGTGAGTCTGCGCCAGCGGATCAACTTTTCAAACTATTCGGTTTCACTGTTGATAACGTGGTAGCGAAAGCGAAAGAAAT
TTTATAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(5-334)

Transketolase, C-terminal domain (Transketolase_C)

(555-660)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.187

99.102

0.478