Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K2L43_RS18130 Genome accession   NZ_CP080761
Coordinates   3831145..3831690 (+) Length   181 a.a.
NCBI ID   WP_015914621.1    Uniprot ID   A0A7T1DSI3
Organism   Diaphorobacter sp. MNS-0     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3826145..3836690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K2L43_RS18120 (K2L43_18120) uvrA 3826449..3829538 (-) 3090 WP_220638181.1 excinuclease ABC subunit UvrA -
  K2L43_RS18125 (K2L43_18125) - 3829829..3831010 (+) 1182 WP_220638182.1 MFS transporter -
  K2L43_RS18130 (K2L43_18130) ssb 3831145..3831690 (+) 546 WP_015914621.1 single-stranded DNA-binding protein Machinery gene
  K2L43_RS18135 (K2L43_18135) - 3831798..3833459 (-) 1662 WP_220638183.1 L-lactate permease -
  K2L43_RS18140 (K2L43_18140) mnmA 3833697..3834836 (-) 1140 WP_220638184.1 tRNA 2-thiouridine(34) synthase MnmA -
  K2L43_RS18145 (K2L43_18145) - 3834903..3835877 (+) 975 WP_220638185.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19413.40 Da        Isoelectric Point: 5.9554

>NTDB_id=594794 K2L43_RS18130 WP_015914621.1 3831145..3831690(+) (ssb) [Diaphorobacter sp. MNS-0]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVRIATTDRWRDKNTGENKEATEWHSVVFNGRLAEIVGQYLRKGSQIYVEG
SLRTRKWTDQSGQERYTTEIRADTMQMLGSRQGMGGGQGGGYDDSGYGDNGGGGGGGYEAPRRAAPAPRPAPPAARPAPA
PVAQPPRAASGFDDMDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=594794 K2L43_RS18130 WP_015914621.1 3831145..3831690(+) (ssb) [Diaphorobacter sp. MNS-0]
ATGGCATCCGTGAACAAAGTCATCATCGTCGGCAACCTGGGGCGCGACCCCGAGATGCGCACCTTCCCCAGCGGCGACCA
GGTCGCCAACGTGCGCATCGCCACGACGGACCGCTGGCGCGACAAGAACACCGGCGAGAACAAGGAAGCCACCGAATGGC
ACAGCGTGGTCTTCAACGGCCGCCTGGCCGAGATCGTGGGCCAGTACCTGCGCAAGGGCTCCCAGATCTACGTGGAAGGC
AGCCTGCGCACGCGCAAATGGACCGACCAGAGCGGCCAGGAGCGCTACACCACCGAAATCCGCGCCGACACCATGCAGAT
GCTGGGCAGCCGCCAGGGCATGGGCGGCGGCCAGGGCGGCGGCTATGACGACAGCGGCTACGGCGACAACGGGGGCGGTG
GTGGTGGCGGCTACGAGGCCCCGCGCCGCGCCGCACCCGCGCCGCGCCCCGCCCCCCCCGCGGCCCGCCCCGCACCCGCG
CCCGTGGCACAGCCGCCGCGCGCCGCATCGGGCTTTGACGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T1DSI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.813

100

0.552
  ssb Vibrio cholerae strain A1552

50.267

100

0.519
  ssb Neisseria gonorrhoeae MS11

44.751

100

0.448
  ssb Neisseria meningitidis MC58

42.308

100

0.425