Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABEKA_RS04495 Genome accession   NZ_CP080636
Coordinates   638692..639279 (-) Length   195 a.a.
NCBI ID   WP_005245776.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain EK30A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 633692..644279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEKA_RS04470 (ABEKA_0623) - 634453..634680 (+) 228 WP_004647282.1 hypothetical protein -
  ABEKA_RS04480 (ABEKA_0625) - 635036..635884 (-) 849 WP_222110610.1 class I SAM-dependent methyltransferase -
  ABEKA_RS04485 (ABEKA_0626) - 635888..637195 (-) 1308 WP_222110611.1 FAD-dependent oxidoreductase -
  ABEKA_RS04490 (ABEKA_0627) ahpC 637817..638380 (-) 564 WP_005105379.1 alkyl hydroperoxide reductase subunit C -
  ABEKA_RS04495 (ABEKA_0628) ssb 638692..639279 (-) 588 WP_005245776.1 single-stranded DNA-binding protein Machinery gene
  ABEKA_RS04500 (ABEKA_0629) - 639331..640695 (-) 1365 WP_180038233.1 MFS transporter -
  ABEKA_RS04505 (ABEKA_0630) - 640848..641936 (-) 1089 WP_004647275.1 DUF475 domain-containing protein -
  ABEKA_RS04510 (ABEKA_0631) tenA 642159..642830 (+) 672 WP_222110612.1 thiaminase II -
  ABEKA_RS04515 (ABEKA_0632) - 643054..643422 (+) 369 WP_222110613.1 hypothetical protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21332.04 Da        Isoelectric Point: 6.4820

>NTDB_id=594613 ABEKA_RS04495 WP_005245776.1 638692..639279(-) (ssb) [Acinetobacter lwoffii strain EK30A]
MRGVNKVILVGTLGKDPETKTFANGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSSRPQNDQGESSFNQPRFNNNNQANNNQGGYGNNPQSGYGSAPQQGGFSNN
QGGGYGNNNPSGFAPKSAPAPTAAPAADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=594613 ABEKA_RS04495 WP_005245776.1 638692..639279(-) (ssb) [Acinetobacter lwoffii strain EK30A]
ATGCGTGGTGTAAATAAAGTTATTTTAGTGGGTACTTTGGGTAAAGATCCGGAAACCAAAACTTTTGCAAATGGTGGCTC
TCTCACTCAATTCTCGATCGCAACCAGCGATTCGTGGACAGATAAAAGTACCGGTGAACGTAAAGAACAAACGGAATGGC
ACCGTATCGTGTTGCATAACCGTTTAGGTGAAATTGCACAGCAATATCTTCGTAAAGGCTCAAAAGTATATATTGAAGGT
TCATTACGTACCCGTCAGTGGACTGACCAGAATGGTCAGGAGCGCTATACGACGGAAATTCGTGGTGAACAAATGCAGAT
GTTAGACTCTAGCCGTCCTCAAAATGATCAGGGCGAGAGCAGCTTTAACCAGCCACGCTTTAATAACAATAATCAGGCGA
ACAACAACCAGGGTGGTTATGGCAATAACCCGCAATCAGGTTATGGTTCAGCGCCACAGCAAGGCGGTTTTAGCAACAAC
CAGGGCGGCGGTTATGGCAACAATAATCCGAGTGGTTTTGCGCCAAAATCTGCACCTGCTCCAACAGCAGCACCTGCAGC
AGATCTAGATGATGACCTTCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.783

100

0.497
  ssb Vibrio cholerae strain A1552

41.206

100

0.421
  ssb Neisseria meningitidis MC58

37.5

98.462

0.369
  ssb Neisseria gonorrhoeae MS11

37.5

98.462

0.369