Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   K3G18_RS21000 Genome accession   NZ_CP080629
Coordinates   4067686..4068204 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain YPS-32     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4062686..4073204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3G18_RS20970 (K3G18_20970) yyaJ 4063189..4064544 (+) 1356 WP_029318525.1 MFS transporter -
  K3G18_RS20975 (K3G18_20975) maa 4064578..4065132 (-) 555 WP_032722825.1 sugar O-acetyltransferase -
  K3G18_RS20980 (K3G18_20980) yyaH 4065150..4065530 (-) 381 WP_003244460.1 VOC family protein -
  K3G18_RS20985 (K3G18_20985) ccpB 4065586..4066521 (-) 936 WP_032722826.1 transcriptional regulator CcpB -
  K3G18_RS20990 (K3G18_20990) xth 4066580..4067338 (-) 759 WP_032722827.1 exodeoxyribonuclease III -
  K3G18_RS20995 (K3G18_20995) rpsR 4067403..4067642 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  K3G18_RS21000 (K3G18_21000) ssbA 4067686..4068204 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  K3G18_RS21005 (K3G18_21005) rpsF 4068245..4068532 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  K3G18_RS21010 (K3G18_21010) ychF 4068643..4069743 (-) 1101 WP_032722828.1 redox-regulated ATPase YchF -
  K3G18_RS21015 (K3G18_21015) yyaE 4069870..4071873 (-) 2004 WP_032722829.1 molybdopterin-dependent oxidoreductase -
  K3G18_RS21020 (K3G18_21020) yyzM 4071924..4072130 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=594553 K3G18_RS21000 WP_003219228.1 4067686..4068204(-) (ssbA) [Bacillus subtilis strain YPS-32]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=594553 K3G18_RS21000 WP_003219228.1 4067686..4068204(-) (ssbA) [Bacillus subtilis strain YPS-32]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAACCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378