Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A9R16_RS02875 Genome accession   NZ_CP080624
Coordinates   570164..570640 (+) Length   158 a.a.
NCBI ID   WP_065972101.1    Uniprot ID   A0A1C2FXN4
Organism   Acidiferrobacter thiooxydans strain ZJ     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 565164..575640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9R16_RS02860 (A9R16_002885) - 565458..566234 (+) 777 WP_065972104.1 glycosyltransferase family 2 protein -
  A9R16_RS02865 (A9R16_002890) - 566290..567003 (+) 714 WP_065972103.1 SAM hydrolase/SAM-dependent halogenase family protein -
  A9R16_RS02870 (A9R16_002895) uvrA 566968..569844 (-) 2877 WP_065972102.1 excinuclease ABC subunit UvrA -
  A9R16_RS02875 (A9R16_002900) ssb 570164..570640 (+) 477 WP_065972101.1 single-stranded DNA-binding protein Machinery gene
  A9R16_RS02880 (A9R16_002905) - 570772..572049 (+) 1278 WP_065972100.1 tyrosine-type recombinase/integrase -
  A9R16_RS02885 (A9R16_002910) - 572054..573592 (+) 1539 WP_218060525.1 site-specific integrase -
  A9R16_RS02890 (A9R16_002915) - 573585..575639 (+) 2055 WP_065972098.1 integrase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 16881.72 Da        Isoelectric Point: 5.0186

>NTDB_id=594400 A9R16_RS02875 WP_065972101.1 570164..570640(+) (ssb) [Acidiferrobacter thiooxydans strain ZJ]
MARGINKVILIGNLGKDPEIRYVPNGGAVANLNIATSESWKDKATGEKQERTEWHRVVFFGKLAEIASEYLKKGAQIYVE
GRLQTRKWQDKSGQDRYTTEIVGSELQMLGGRGGPGGGEGPPADLSYDSPASGPSGRSTPSSAPAPGGGEDFDDDIPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=594400 A9R16_RS02875 WP_065972101.1 570164..570640(+) (ssb) [Acidiferrobacter thiooxydans strain ZJ]
ATGGCGCGCGGCATCAACAAGGTCATCCTGATAGGCAATCTCGGCAAGGACCCGGAGATCCGTTACGTGCCGAACGGCGG
TGCGGTGGCCAATCTGAATATCGCCACCTCCGAGTCATGGAAGGACAAGGCGACCGGCGAGAAGCAGGAGCGGACCGAGT
GGCACCGGGTCGTATTCTTCGGAAAGCTTGCGGAAATCGCGAGCGAGTACCTGAAGAAAGGGGCACAGATCTACGTCGAG
GGACGCCTGCAGACGCGTAAGTGGCAGGACAAGTCGGGGCAGGATCGCTACACGACCGAGATTGTGGGTAGCGAACTGCA
GATGCTGGGTGGCCGCGGCGGTCCCGGCGGAGGCGAAGGGCCACCCGCGGACCTGTCTTACGACTCGCCCGCATCCGGCC
CGAGTGGCCGATCGACCCCGTCGTCGGCGCCGGCCCCGGGCGGCGGGGAGGACTTCGACGACGACATCCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C2FXN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.714

100

0.639
  ssb Glaesserella parasuis strain SC1401

52.247

100

0.589
  ssb Neisseria meningitidis MC58

47.977

100

0.525
  ssb Neisseria gonorrhoeae MS11

46.286

100

0.513