Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K1T73_RS08595 Genome accession   NZ_CP080623
Coordinates   1751698..1752219 (-) Length   173 a.a.
NCBI ID   WP_220603500.1    Uniprot ID   -
Organism   Roseovarius sp. SCSIO 43702     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1746698..1757219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T73_RS08570 (K1T73_08570) - 1747460..1747747 (+) 288 WP_220603495.1 DUF1330 domain-containing protein -
  K1T73_RS08575 (K1T73_08575) - 1747767..1748261 (+) 495 WP_220603496.1 MOSC domain-containing protein -
  K1T73_RS08580 (K1T73_08580) - 1748281..1748826 (+) 546 WP_220603497.1 histidine phosphatase family protein -
  K1T73_RS08585 (K1T73_08585) typA 1748885..1750705 (-) 1821 WP_220603498.1 translational GTPase TypA -
  K1T73_RS08590 (K1T73_08590) - 1750785..1751648 (-) 864 WP_220603499.1 GNAT family N-acetyltransferase -
  K1T73_RS08595 (K1T73_08595) ssb 1751698..1752219 (-) 522 WP_220603500.1 single-stranded DNA-binding protein Machinery gene
  K1T73_RS08600 (K1T73_08600) - 1752420..1753019 (+) 600 WP_220603501.1 lytic transglycosylase domain-containing protein -
  K1T73_RS08605 (K1T73_08605) - 1753028..1753828 (-) 801 WP_259400505.1 AraC family transcriptional regulator -
  K1T73_RS08610 (K1T73_08610) miaA 1753917..1754798 (-) 882 WP_220603502.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  K1T73_RS08615 (K1T73_08615) pyrH 1754935..1755666 (+) 732 WP_220603503.1 UMP kinase -
  K1T73_RS08620 (K1T73_08620) - 1755687..1756724 (-) 1038 WP_220603504.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18164.78 Da        Isoelectric Point: 5.3412

>NTDB_id=594395 K1T73_RS08595 WP_220603500.1 1751698..1752219(-) (ssb) [Roseovarius sp. SCSIO 43702]
MAGSVNKVILIGNLGRDPEVRTFQNGGKVCNLRIATSETWKDRNTGERKERTEWHSVAIFSEPLANVAERYLKKGSKVYI
EGQLETRKWQDQSGQDRYSTEVVLRPYRSELTMLDGRGEGGGGGGGYGDAGGGYGSGGGGYGGDYGGGGSQGGGSSGGGG
SRGPSDMDDEIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=594395 K1T73_RS08595 WP_220603500.1 1751698..1752219(-) (ssb) [Roseovarius sp. SCSIO 43702]
ATGGCCGGCTCGGTGAACAAGGTGATACTAATCGGCAATCTCGGGCGCGACCCCGAGGTGCGGACATTCCAGAACGGCGG
AAAGGTGTGCAACCTGCGCATCGCCACGTCCGAGACGTGGAAGGACCGCAACACCGGCGAACGCAAGGAACGCACCGAAT
GGCACTCGGTCGCGATCTTCTCCGAACCGCTGGCCAACGTCGCTGAGCGATACCTGAAGAAAGGCTCCAAGGTCTATATC
GAGGGGCAGCTCGAAACCCGCAAATGGCAGGACCAGTCGGGCCAGGACCGCTATTCGACCGAGGTCGTTCTGCGTCCCTA
CCGCAGCGAACTCACGATGCTCGACGGTCGTGGCGAAGGCGGCGGCGGTGGCGGCGGCTATGGTGACGCCGGTGGCGGCT
ATGGCAGCGGCGGCGGTGGCTATGGCGGCGATTACGGCGGCGGCGGCTCGCAGGGCGGCGGCTCTTCCGGCGGCGGTGGA
TCGCGCGGCCCTTCCGACATGGACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.179

100

0.532
  ssb Glaesserella parasuis strain SC1401

47.312

100

0.509
  ssb Neisseria meningitidis MC58

42.778

100

0.445
  ssb Neisseria gonorrhoeae MS11

42.778

100

0.445