Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PSYCG_RS11300 Genome accession   NC_021661
Coordinates   2699633..2700688 (-) Length   351 a.a.
NCBI ID   WP_041772319.1    Uniprot ID   -
Organism   Psychrobacter sp. G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2694633..2705688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYCG_RS11280 (PSYCG_11735) pilQ 2695295..2697673 (-) 2379 WP_020444312.1 type IV pilus secretin PilQ -
  PSYCG_RS11285 (PSYCG_11740) - 2697701..2698240 (-) 540 WP_020444313.1 pilus assembly protein PilP -
  PSYCG_RS11290 (PSYCG_11745) - 2698240..2698971 (-) 732 WP_020444314.1 type 4a pilus biogenesis protein PilO -
  PSYCG_RS11295 (PSYCG_11750) - 2698968..2699633 (-) 666 WP_020444315.1 PilN domain-containing protein -
  PSYCG_RS11300 (PSYCG_11755) comM 2699633..2700688 (-) 1056 WP_041772319.1 type IV pilus assembly protein PilM Machinery gene
  PSYCG_RS11305 (PSYCG_11760) - 2700884..2703577 (+) 2694 WP_020444317.1 penicillin-binding protein 1A -
  PSYCG_RS11310 (PSYCG_11765) - 2703756..2704280 (-) 525 WP_011514488.1 DUF6586 family protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38196.38 Da        Isoelectric Point: 4.4164

>NTDB_id=59439 PSYCG_RS11300 WP_041772319.1 2699633..2700688(-) (comM) [Psychrobacter sp. G]
MRLFTSKSRHLIGVDICTTSVKLVDIQRQQGVFHLRSYGTEILPEGVVIDKLIIDTEVVGNTIAGLARRCQAAGSSAATA
VSGSAVITKIIDMDMVLSDVEREAQIRLDADQYIPYPLEDVNLDFEVLGPSLINDDMVQVLLAASRSENVDQRVDALTFG
GLQTKVMDIESHAIERAFGLMADSLPNLPDLVALVDIGHNQTTLYVAKNGEFIYSREQLFGGSQLTEAIQNRYGLSAEEA
SISKRERALPDDYYTDVLTPFIENTIQQITRSLQFYFSSSQYSSIDHVVLAGGSSSIAGLAGMAQQRLGVPVSIANPFIN
MTIAPHIDHEQLAIDAPSLMAACGLALRSFD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=59439 PSYCG_RS11300 WP_041772319.1 2699633..2700688(-) (comM) [Psychrobacter sp. G]
GTGAGGCTATTTACTTCTAAGAGTCGACATTTGATTGGCGTGGATATCTGTACCACCTCAGTGAAGTTGGTTGACATACA
GCGCCAACAAGGCGTTTTCCACCTAAGATCTTATGGTACTGAAATATTACCTGAAGGCGTAGTCATCGACAAACTCATTA
TAGACACGGAAGTGGTAGGCAATACTATAGCAGGCTTGGCAAGGCGTTGCCAAGCGGCTGGTAGTAGTGCAGCCACAGCA
GTCTCAGGGTCAGCGGTGATTACTAAAATCATCGATATGGATATGGTGCTAAGTGACGTTGAGCGTGAAGCTCAAATTCG
TTTGGATGCTGACCAATACATACCTTATCCGCTAGAAGACGTCAATTTGGACTTTGAAGTATTGGGTCCCTCTCTTATAA
ATGATGACATGGTACAAGTACTGCTTGCCGCCTCTCGTTCAGAAAACGTTGACCAAAGAGTTGATGCCTTAACCTTTGGT
GGTTTGCAAACCAAGGTAATGGATATTGAGTCGCATGCCATTGAGCGTGCTTTTGGCTTAATGGCAGACAGTCTGCCAAA
CTTGCCAGATTTGGTGGCGCTGGTTGATATCGGACACAATCAAACAACATTATATGTCGCCAAAAATGGCGAGTTTATCT
ATAGTCGTGAGCAGTTATTTGGAGGCAGTCAGCTGACGGAAGCCATCCAAAACCGCTATGGTTTGTCTGCTGAAGAAGCT
TCTATTAGTAAGCGCGAGCGTGCTCTACCTGATGATTACTATACTGATGTCTTAACACCATTTATAGAAAATACCATCCA
ACAAATCACTCGCTCTTTACAGTTTTATTTCTCCTCAAGTCAATATAGTAGTATCGATCATGTGGTCCTTGCTGGTGGCA
GTAGCTCTATTGCGGGTCTTGCTGGCATGGCGCAGCAGCGATTGGGCGTGCCTGTGAGTATTGCAAATCCGTTCATTAAT
ATGACTATTGCGCCGCATATCGATCATGAGCAACTGGCGATTGATGCACCCAGCTTAATGGCCGCTTGCGGTCTGGCGTT
AAGGAGCTTTGACTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

51.282

100

0.513
  pilM Acinetobacter baumannii D1279779

51.282

100

0.513
  comM Acinetobacter baylyi ADP1

48.148

100

0.481
  pilM Legionella pneumophila strain ERS1305867

41.076

100

0.413

Multiple sequence alignment