Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSYCG_RS10225 Genome accession   NC_021661
Coordinates   2451100..2451759 (-) Length   219 a.a.
NCBI ID   WP_020444130.1    Uniprot ID   A0A9E9B299
Organism   Psychrobacter sp. G     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2446100..2456759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYCG_RS10210 (PSYCG_10630) - 2448328..2449230 (-) 903 WP_020444127.1 type II secretion system protein N -
  PSYCG_RS10215 (PSYCG_10635) gspN 2449231..2450061 (-) 831 WP_020444128.1 type II secretion system protein N -
  PSYCG_RS10220 (PSYCG_10640) - 2450278..2450601 (-) 324 WP_020444129.1 H-NS family nucleoid-associated regulatory protein -
  PSYCG_RS10225 (PSYCG_10645) ssb 2451100..2451759 (-) 660 WP_020444130.1 single-stranded DNA-binding protein Machinery gene
  PSYCG_RS10230 (PSYCG_10650) - 2451868..2453232 (-) 1365 WP_020444131.1 MFS transporter -
  PSYCG_RS10235 (PSYCG_10655) uvrA 2453817..2456723 (+) 2907 WP_020444132.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23362.03 Da        Isoelectric Point: 5.7762

>NTDB_id=59436 PSYCG_RS10225 WP_020444130.1 2451100..2451759(-) (ssb) [Psychrobacter sp. G]
MRGVNKVIIIGNLGADPEARQFNNGGSVTNISVATSEQWTDKQSGEKREATEWHRISLFNRLGEIAAQYLRKGSKVYIEG
SLRTRKYQDPNGQDRYITEIRAEQMQMLDGSTGGSNDAGGGFGSNNQGGQSNQGSYGNQGGGFSNQGGQNDYGQQGGNQP
AQQGGYNQGGSASQGGHQNSFNNQNAPAQQNQFNKPTQAPAQSKPTAMPDGPVDDDIPF

Nucleotide


Download         Length: 660 bp        

>NTDB_id=59436 PSYCG_RS10225 WP_020444130.1 2451100..2451759(-) (ssb) [Psychrobacter sp. G]
ATGCGCGGTGTTAATAAAGTTATCATCATCGGTAACCTCGGTGCAGACCCTGAGGCACGTCAATTCAATAACGGCGGTAG
CGTGACCAATATTTCGGTTGCGACATCAGAGCAGTGGACAGACAAGCAAAGCGGTGAAAAAAGAGAAGCAACAGAATGGC
ATCGTATCTCACTATTCAATCGCTTGGGTGAAATCGCTGCGCAGTATCTTCGTAAAGGCAGTAAGGTATATATCGAAGGC
AGCTTACGTACCCGTAAATATCAAGATCCTAACGGACAAGACCGTTATATCACTGAAATTCGTGCTGAACAAATGCAAAT
GCTAGATGGCTCGACAGGTGGTAGTAATGATGCTGGTGGTGGCTTTGGTAGCAATAACCAAGGTGGTCAAAGCAATCAAG
GTAGCTATGGTAATCAGGGCGGCGGATTTAGTAACCAAGGTGGCCAGAACGACTATGGTCAGCAAGGAGGCAATCAGCCC
GCTCAACAAGGCGGTTATAATCAAGGCGGCAGTGCGTCACAGGGTGGTCATCAAAATAGCTTTAACAATCAGAATGCGCC
CGCTCAGCAGAATCAATTTAATAAACCGACTCAAGCACCAGCGCAGTCGAAGCCTACAGCAATGCCAGATGGCCCTGTAG
ACGATGACATTCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.545

100

0.498
  ssb Vibrio cholerae strain A1552

44.196

100

0.452
  ssb Neisseria gonorrhoeae MS11

38.636

100

0.388
  ssb Neisseria meningitidis MC58

38.889

98.63

0.384

Multiple sequence alignment