Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K1X15_RS09260 Genome accession   NZ_CP080590
Coordinates   1928796..1929302 (-) Length   168 a.a.
NCBI ID   WP_220307166.1    Uniprot ID   -
Organism   Devosia salina strain SCS-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1923796..1934302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1X15_RS09245 (K1X15_09245) - 1926220..1926747 (+) 528 WP_220307163.1 hypothetical protein -
  K1X15_RS09250 (K1X15_09250) - 1926859..1928133 (+) 1275 WP_220307164.1 diguanylate cyclase domain-containing protein -
  K1X15_RS09255 (K1X15_09255) - 1928239..1928736 (+) 498 WP_220307165.1 cytochrome b -
  K1X15_RS09260 (K1X15_09260) ssb 1928796..1929302 (-) 507 WP_220307166.1 single-stranded DNA-binding protein Machinery gene
  K1X15_RS09265 (K1X15_09265) - 1929581..1930225 (+) 645 WP_220307167.1 LysE family translocator -
  K1X15_RS09270 (K1X15_09270) uvrA 1930418..1933309 (+) 2892 WP_220307168.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18018.80 Da        Isoelectric Point: 5.9568

>NTDB_id=594280 K1X15_RS09260 WP_220307166.1 1928796..1929302(-) (ssb) [Devosia salina strain SCS-3]
MAGSVNKVILVGNLGNDPEVRNLPSGGKVVNLSVATSERWRDRNSGEQREKTEWHRVVIFSEGLARVAEQYLKKGSKVYL
EGQLQTRKWQDQSGQDKYSTEVVLQNFNSSMVLLDGRGEGAGDSGGYGGGDNGGFRGVRDNSGGGGGRRPSANAPAFEPG
GMDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=594280 K1X15_RS09260 WP_220307166.1 1928796..1929302(-) (ssb) [Devosia salina strain SCS-3]
ATGGCTGGCAGCGTGAACAAGGTCATTCTGGTGGGCAATCTGGGCAATGACCCGGAAGTGCGGAACCTGCCGAGCGGCGG
CAAGGTGGTCAATCTGTCGGTTGCGACGTCGGAACGCTGGCGCGACCGCAATAGCGGCGAGCAGCGCGAAAAGACCGAGT
GGCACCGCGTGGTGATCTTCTCGGAAGGTCTGGCGCGCGTGGCCGAGCAGTATCTGAAGAAGGGGTCGAAGGTCTATCTC
GAGGGCCAGCTGCAGACCCGCAAGTGGCAGGACCAGTCCGGCCAGGATAAGTATTCCACCGAGGTGGTGCTGCAGAACTT
CAACTCGTCCATGGTGCTGCTCGATGGCCGTGGCGAGGGTGCCGGCGATAGCGGTGGCTATGGCGGCGGTGACAATGGCG
GCTTCCGCGGCGTGCGCGACAATTCCGGCGGCGGTGGCGGACGGCGCCCCTCCGCCAATGCCCCGGCCTTCGAGCCGGGC
GGCATGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.579

100

0.583
  ssb Vibrio cholerae strain A1552

52.273

100

0.548
  ssb Neisseria meningitidis MC58

41.081

100

0.452
  ssb Neisseria gonorrhoeae MS11

41.081

100

0.452