Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ABVS_RS07825 | Genome accession | NZ_CP080576 |
| Coordinates | 1636453..1637040 (+) | Length | 195 a.a. |
| NCBI ID | WP_004281391.1 | Uniprot ID | A0A2K8UM26 |
| Organism | Acinetobacter lwoffii strain VS15 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1625401..1665936 | 1636453..1637040 | within | 0 |
Gene organization within MGE regions
Location: 1625401..1665936
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABVS_RS07790 (ABVS_1629) | - | 1626544..1628202 (+) | 1659 | WP_222112440.1 | sensor domain-containing diguanylate cyclase | - |
| ABVS_RS07795 (ABVS_1630) | - | 1628324..1629178 (-) | 855 | WP_004281382.1 | AbiJ-NTD4 domain-containing protein | - |
| ABVS_RS07800 (ABVS_1631) | uvrA | 1629296..1632127 (-) | 2832 | WP_004281383.1 | excinuclease ABC subunit UvrA | - |
| ABVS_RS07805 (ABVS_1632) | - | 1632309..1632677 (-) | 369 | WP_004281385.1 | hypothetical protein | - |
| ABVS_RS07810 (ABVS_1633) | tenA | 1632901..1633572 (-) | 672 | WP_004281386.1 | thiaminase II | - |
| ABVS_RS07815 (ABVS_1634) | - | 1633795..1634883 (+) | 1089 | WP_004647275.1 | DUF475 domain-containing protein | - |
| ABVS_RS07820 (ABVS_1635) | - | 1635037..1636401 (+) | 1365 | WP_004281389.1 | MFS transporter | - |
| ABVS_RS07825 (ABVS_1636) | ssb | 1636453..1637040 (+) | 588 | WP_004281391.1 | single-stranded DNA-binding protein | Machinery gene |
| ABVS_RS07830 (ABVS_1637) | - | 1637259..1638434 (+) | 1176 | WP_005095121.1 | tyrosine-type recombinase/integrase | - |
| ABVS_RS07835 (ABVS_1638) | - | 1638415..1640016 (+) | 1602 | WP_005095123.1 | site-specific integrase | - |
| ABVS_RS07840 (ABVS_1639) | - | 1640013..1642016 (+) | 2004 | WP_004281395.1 | hypothetical protein | - |
| ABVS_RS07845 (ABVS_1640) | - | 1642009..1642485 (+) | 477 | WP_005095125.1 | hypothetical protein | - |
| ABVS_RS07850 (ABVS_1641) | tnpC | 1642769..1644373 (-) | 1605 | WP_202034696.1 | IS66 family transposase | - |
| ABVS_RS07855 (ABVS_1642) | tnpB | 1644448..1644783 (-) | 336 | WP_004691519.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| ABVS_RS07860 (ABVS_1643) | tnpA | 1644780..1645163 (-) | 384 | WP_222111902.1 | IS66-like element accessory protein TnpA | - |
| ABVS_RS07865 (ABVS_1644) | - | 1645209..1645454 (-) | 246 | WP_228740335.1 | hypothetical protein | - |
| ABVS_RS07870 (ABVS_1645) | - | 1645651..1645881 (+) | 231 | WP_004281399.1 | helix-turn-helix domain-containing protein | - |
| ABVS_RS07875 (ABVS_1646) | - | 1645982..1647340 (+) | 1359 | WP_228128548.1 | DNA adenine methylase | - |
| ABVS_RS07880 (ABVS_1647) | - | 1647344..1648306 (+) | 963 | WP_005095129.1 | phosphoribosyltransferase-like protein | - |
| ABVS_RS07885 (ABVS_1648) | - | 1648303..1650294 (+) | 1992 | WP_004281404.1 | hypothetical protein | - |
| ABVS_RS07890 (ABVS_1649) | - | 1650294..1651256 (+) | 963 | WP_005095131.1 | hypothetical protein | - |
| ABVS_RS07895 (ABVS_1650) | tnpA | 1651628..1652056 (+) | 429 | WP_004282342.1 | IS66-like element accessory protein TnpA | - |
| ABVS_RS07900 (ABVS_1651) | tnpB | 1652053..1652388 (+) | 336 | WP_000618090.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| ABVS_RS07905 (ABVS_1652) | tnpC | 1652463..1654067 (+) | 1605 | WP_005095133.1 | IS66 family transposase | - |
| ABVS_RS07910 (ABVS_1653) | - | 1654637..1654987 (+) | 351 | Protein_1524 | GNAT family N-acetyltransferase | - |
| ABVS_RS07915 (ABVS_1654) | - | 1655044..1655499 (+) | 456 | WP_004647755.1 | helix-turn-helix domain-containing protein | - |
| ABVS_RS07920 (ABVS_1655) | - | 1655516..1656055 (+) | 540 | WP_236769088.1 | IS630 family transposase | - |
| ABVS_RS16685 (ABVS_1656) | - | 1656065..1656223 (+) | 159 | Protein_1527 | GNAT family N-acetyltransferase | - |
| ABVS_RS07925 (ABVS_1657) | - | 1656329..1657084 (+) | 756 | WP_005095136.1 | condensation domain-containing protein | - |
| ABVS_RS07930 (ABVS_1658) | - | 1657121..1657432 (-) | 312 | Protein_1529 | integrase core domain-containing protein | - |
| ABVS_RS07935 (ABVS_1659) | tnpA | 1657520..1657903 (+) | 384 | WP_004733109.1 | IS66-like element accessory protein TnpA | - |
| ABVS_RS07940 (ABVS_1660) | tnpB | 1657900..1658235 (+) | 336 | WP_005265675.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| ABVS_RS07945 (ABVS_1661) | - | 1658310..1659893 (+) | 1584 | WP_168730562.1 | IS66-like element ISAba25 family transposase | - |
| ABVS_RS07950 | - | 1659926..1660839 (-) | 914 | Protein_1533 | IS3 family transposase | - |
| ABVS_RS07955 (ABVS_1664) | tnpB | 1660852..1661178 (-) | 327 | WP_005095140.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| ABVS_RS07960 (ABVS_1665) | tnpA | 1661175..1661603 (-) | 429 | WP_004282342.1 | IS66-like element accessory protein TnpA | - |
| ABVS_RS07965 | - | 1661670..1661909 (-) | 240 | WP_035337528.1 | hypothetical protein | - |
| ABVS_RS07970 (ABVS_1667) | - | 1661911..1662624 (+) | 714 | WP_004278674.1 | helix-turn-helix domain-containing protein | - |
| ABVS_RS07975 (ABVS_1668) | - | 1663007..1664158 (+) | 1152 | WP_004646736.1 | IS4-like element ISAbe18 family transposase | - |
| ABVS_RS07980 (ABVS_1670) | - | 1664430..1665559 (+) | 1130 | WP_128080864.1 | IS3-like element ISAcsp5 family transposase | - |
Sequence
Protein
Download Length: 195 a.a. Molecular weight: 21359.06 Da Isoelectric Point: 6.4820
>NTDB_id=594197 ABVS_RS07825 WP_004281391.1 1636453..1637040(+) (ssb) [Acinetobacter lwoffii strain VS15]
MRGVNKVILVGTLGKDPETKTFANGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSSRPQNDQGESSFNQPRFNNNNQANNNQGGYGNNPQSGYGSAPQQGGFNNN
QGGGYGNNNPSGFAPKSAPAPTAAPAADLDDDLPF
MRGVNKVILVGTLGKDPETKTFANGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSSRPQNDQGESSFNQPRFNNNNQANNNQGGYGNNPQSGYGSAPQQGGFNNN
QGGGYGNNNPSGFAPKSAPAPTAAPAADLDDDLPF
Nucleotide
Download Length: 588 bp
>NTDB_id=594197 ABVS_RS07825 WP_004281391.1 1636453..1637040(+) (ssb) [Acinetobacter lwoffii strain VS15]
ATGCGTGGTGTAAATAAAGTTATTTTAGTGGGTACTTTGGGTAAAGATCCGGAAACCAAAACTTTTGCAAATGGTGGCTC
TCTCACTCAATTCTCGATCGCAACCAGCGATTCGTGGACAGATAAAAGTACCGGTGAACGTAAAGAACAAACGGAATGGC
ACCGTATCGTGTTGCATAACCGTTTAGGTGAAATTGCGCAGCAATATCTTCGTAAAGGTTCAAAAGTATATATTGAAGGT
TCATTACGTACCCGTCAGTGGACTGACCAGAATGGTCAGGAACGCTATACGACGGAAATTCGTGGTGAACAAATGCAGAT
GCTAGACTCTAGCCGTCCTCAAAATGATCAGGGCGAGAGCAGCTTTAACCAGCCACGCTTTAATAACAATAATCAGGCGA
ACAACAACCAGGGCGGTTATGGCAATAACCCGCAATCAGGTTATGGTTCAGCACCACAGCAAGGCGGTTTTAACAACAAC
CAGGGCGGCGGTTATGGCAACAATAACCCGAGTGGTTTTGCGCCAAAATCTGCACCTGCTCCAACAGCAGCACCTGCAGC
AGATCTAGATGATGACTTACCATTTTAG
ATGCGTGGTGTAAATAAAGTTATTTTAGTGGGTACTTTGGGTAAAGATCCGGAAACCAAAACTTTTGCAAATGGTGGCTC
TCTCACTCAATTCTCGATCGCAACCAGCGATTCGTGGACAGATAAAAGTACCGGTGAACGTAAAGAACAAACGGAATGGC
ACCGTATCGTGTTGCATAACCGTTTAGGTGAAATTGCGCAGCAATATCTTCGTAAAGGTTCAAAAGTATATATTGAAGGT
TCATTACGTACCCGTCAGTGGACTGACCAGAATGGTCAGGAACGCTATACGACGGAAATTCGTGGTGAACAAATGCAGAT
GCTAGACTCTAGCCGTCCTCAAAATGATCAGGGCGAGAGCAGCTTTAACCAGCCACGCTTTAATAACAATAATCAGGCGA
ACAACAACCAGGGCGGTTATGGCAATAACCCGCAATCAGGTTATGGTTCAGCACCACAGCAAGGCGGTTTTAACAACAAC
CAGGGCGGCGGTTATGGCAACAATAACCCGAGTGGTTTTGCGCCAAAATCTGCACCTGCTCCAACAGCAGCACCTGCAGC
AGATCTAGATGATGACTTACCATTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
51.759 |
100 |
0.528 |
| ssb | Vibrio cholerae strain A1552 |
41.206 |
100 |
0.421 |
| ssb | Neisseria meningitidis MC58 |
37.5 |
98.462 |
0.369 |
| ssb | Neisseria gonorrhoeae MS11 |
37.5 |
98.462 |
0.369 |