Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   ABVS_RS05915 Genome accession   NZ_CP080576
Coordinates   1213549..1214688 (+) Length   379 a.a.
NCBI ID   WP_222112366.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain VS15     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1208549..1219688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVS_RS05895 (ABVS_1232) - 1209024..1211111 (-) 2088 WP_222112364.1 TonB-dependent copper receptor -
  ABVS_RS05900 (ABVS_1233) - 1211184..1211594 (-) 411 WP_222112365.1 DUF2946 family protein -
  ABVS_RS05905 (ABVS_1234) def 1211687..1212217 (-) 531 WP_004644875.1 peptide deformylase -
  ABVS_RS05910 (ABVS_1235) tsaP 1212338..1213492 (+) 1155 WP_138742548.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABVS_RS05915 (ABVS_1236) dprA 1213549..1214688 (+) 1140 WP_222112366.1 DNA-processing protein DprA Machinery gene
  ABVS_RS05920 (ABVS_1237) - 1214730..1215299 (+) 570 WP_222112367.1 L-threonylcarbamoyladenylate synthase -
  ABVS_RS05925 (ABVS_1238) - 1215744..1216640 (-) 897 WP_004644871.1 DMT family transporter -
  ABVS_RS05930 (ABVS_1239) - 1216831..1217376 (+) 546 WP_004281007.1 glutathione peroxidase -
  ABVS_RS05935 (ABVS_1241) - 1217701..1218300 (+) 600 WP_004644869.1 hypothetical protein -
  ABVS_RS05940 (ABVS_1242) - 1218442..1219434 (+) 993 WP_005264663.1 pirin family protein -

Sequence


Protein


Download         Length: 379 a.a.        Molecular weight: 42453.31 Da        Isoelectric Point: 6.8124

>NTDB_id=594195 ABVS_RS05915 WP_222112366.1 1213549..1214688(+) (dprA) [Acinetobacter lwoffii strain VS15]
MLNPLSRAQLETITLWYLVQHSLSSFYKISQHYAELAHALQPDQVPVWQALGLHANHVQRLKEFYLPEAQQKFQRCLQQI
QQDSDFILLHSDPHYPQQLHPYADKPPIIFGQGRSDTLLQAQIAIVGSRKPSPHGRQVAYDFAFYLSEQGFYINSGLAHG
IDEAAHRAALQHQGTIAVMATGLDQTYPAQHQSLRQQIIEHGGAVISEFLPDTLPLQHHFPRRNRIVSGLSLGVIVAEAA
LKSGSLITAKLAAEQGKTVFAIPGHIYSEHHQGCHQLIREGAILIDHPQQVIEELALATQWQALENTTKTKVTEATSQQI
PPHLLSLYNQLDWVGQSLDQLGTQVQQEVSALTSQLMELELLGFCTQQAGLYLRCRILK

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=594195 ABVS_RS05915 WP_222112366.1 1213549..1214688(+) (dprA) [Acinetobacter lwoffii strain VS15]
ATGCTGAACCCGTTATCACGCGCGCAACTGGAAACAATTACGTTATGGTATCTGGTTCAGCATTCTCTTTCGAGTTTCTA
TAAAATCAGTCAACATTATGCCGAACTGGCGCATGCCCTTCAGCCGGATCAAGTACCCGTCTGGCAAGCACTCGGCCTTC
ATGCCAATCATGTGCAGCGCTTAAAAGAGTTTTACCTCCCAGAAGCGCAGCAAAAATTTCAGCGATGTCTGCAGCAGATC
CAGCAGGATAGCGATTTTATTTTGCTGCACAGCGATCCGCATTATCCTCAGCAGTTGCATCCTTATGCAGATAAACCACC
GATCATTTTTGGTCAGGGTAGATCCGATACCCTGCTTCAGGCACAGATTGCCATTGTGGGCAGCCGCAAGCCGAGTCCGC
ATGGTCGGCAAGTAGCTTATGATTTTGCTTTTTATTTGAGTGAACAGGGTTTCTATATCAATAGCGGTCTGGCACACGGT
ATTGATGAAGCAGCGCATCGGGCTGCGCTACAGCATCAAGGGACGATTGCGGTAATGGCCACCGGACTGGATCAAACCTA
TCCAGCACAGCATCAGTCACTGCGCCAGCAAATCATTGAGCATGGTGGTGCAGTCATCAGTGAGTTTCTGCCAGATACAC
TGCCTCTGCAGCACCATTTTCCACGGCGCAACCGAATCGTCAGTGGTTTAAGTCTAGGCGTGATTGTGGCAGAAGCCGCA
TTAAAAAGTGGCTCCCTCATTACGGCTAAACTGGCGGCTGAGCAAGGCAAAACCGTATTTGCCATTCCGGGACATATTTA
CAGTGAACATCACCAAGGCTGTCACCAACTGATTCGTGAGGGTGCGATTCTGATTGACCACCCACAACAGGTCATCGAAG
AACTGGCGCTGGCCACGCAATGGCAGGCTTTAGAAAATACCACCAAAACGAAAGTTACTGAAGCAACATCACAGCAAATT
CCACCGCATCTGCTCAGTCTGTATAATCAGCTGGACTGGGTGGGACAGAGTTTGGATCAACTGGGAACGCAGGTTCAGCA
AGAGGTATCTGCTTTGACCAGTCAACTGATGGAACTGGAATTACTCGGTTTTTGTACCCAGCAAGCCGGCCTGTATCTAC
GTTGTCGGATTCTCAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

64.362

99.208

0.639

  dprA Acinetobacter baumannii D1279779

63.298

99.208

0.628

  dprA Acinetobacter baylyi ADP1

59.737

100

0.599