Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ABVS_RS05910 Genome accession   NZ_CP080576
Coordinates   1212338..1213492 (+) Length   384 a.a.
NCBI ID   WP_138742548.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain VS15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1207338..1218492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVS_RS05895 (ABVS_1232) - 1209024..1211111 (-) 2088 WP_222112364.1 TonB-dependent copper receptor -
  ABVS_RS05900 (ABVS_1233) - 1211184..1211594 (-) 411 WP_222112365.1 DUF2946 family protein -
  ABVS_RS05905 (ABVS_1234) def 1211687..1212217 (-) 531 WP_004644875.1 peptide deformylase -
  ABVS_RS05910 (ABVS_1235) tsaP 1212338..1213492 (+) 1155 WP_138742548.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABVS_RS05915 (ABVS_1236) dprA 1213549..1214688 (+) 1140 WP_222112366.1 DNA-processing protein DprA Machinery gene
  ABVS_RS05920 (ABVS_1237) - 1214730..1215299 (+) 570 WP_222112367.1 L-threonylcarbamoyladenylate synthase -
  ABVS_RS05925 (ABVS_1238) - 1215744..1216640 (-) 897 WP_004644871.1 DMT family transporter -
  ABVS_RS05930 (ABVS_1239) - 1216831..1217376 (+) 546 WP_004281007.1 glutathione peroxidase -
  ABVS_RS05935 (ABVS_1241) - 1217701..1218300 (+) 600 WP_004644869.1 hypothetical protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42146.39 Da        Isoelectric Point: 9.0687

>NTDB_id=594194 ABVS_RS05910 WP_138742548.1 1212338..1213492(+) (tsaP) [Acinetobacter lwoffii strain VS15]
MKKVLKGMPFFSALGFKNQMLALAVCVGVSMGTIHSAEAAPARNVNPPALKANAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCEGIISRYLGSTSLQPQIRVESLNNTIPVIPLEHIKQWLE
RYTLLAPDSVQGTPYILGTADQRVLAGKGQKVYARGHGLVVGQRYAVYREAEPYVFTDANGKKYTAALELQQVASGIAVR
GEGDVTTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPTNAENIAAGGQIVRVLGSIGTAARHSVVTIDRGTAHGVQTGH
VFSVNQKGEVVTDPKTKERVQLPGERIGQIMVFKNFDQLSYAYVLESELPIKVGAGIQAPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=594194 ABVS_RS05910 WP_138742548.1 1212338..1213492(+) (tsaP) [Acinetobacter lwoffii strain VS15]
ATGAAAAAGGTTTTGAAGGGCATGCCATTTTTTAGTGCCTTGGGGTTTAAAAATCAGATGCTGGCACTTGCAGTTTGTGT
AGGCGTCAGTATGGGGACCATTCATTCTGCCGAGGCAGCACCTGCACGCAACGTCAATCCACCGGCATTAAAAGCTAATG
CACCGAACGTTTATGTGGTGAAAAAAGGCGATACGCTTTGGGATATCTCGAAACGCTTCCTGAAAAATCCGGTCCGTTGG
CCGGAAATCTGGGCCAGTAATAAGCACGTGAAAAATCCACATTGGATTTTCCCGGGTGACCGCCTGCTGATGTGTGATTA
CCAAGGCCGTCCGATTATTGGTAAAGACGAAGGTGATGGTTGTGAAGGTATTATCAGCCGCTATCTTGGCAGTACTTCTC
TGCAACCCCAGATTCGTGTTGAATCTTTAAATAATACGATTCCAGTGATTCCGCTTGAGCATATCAAGCAGTGGTTGGAA
CGCTATACCCTTCTGGCGCCTGATTCAGTTCAGGGCACACCCTACATTCTCGGAACTGCAGATCAGCGCGTACTGGCTGG
CAAAGGCCAGAAAGTTTATGCACGTGGTCACGGTCTGGTAGTGGGTCAACGCTATGCCGTTTATCGTGAAGCTGAACCGT
ATGTATTTACGGATGCAAACGGCAAGAAATATACGGCTGCACTTGAGCTGCAACAGGTGGCATCTGGTATTGCAGTTCGT
GGCGAAGGTGATGTCACCACACTTGAACTGACAGATAGTTACAATGCTGAAGTACGTCGCGGTGATCGTGTCTTACCAGA
ATACGATCCAATGTTACCGACTCTGTTCTATCCGACCAATGCAGAAAATATTGCTGCCGGTGGCCAGATTGTGCGTGTAT
TGGGGTCAATTGGTACAGCAGCACGTCATAGTGTTGTCACCATTGACCGTGGTACGGCACATGGAGTTCAGACGGGTCAT
GTCTTTAGTGTGAATCAAAAAGGTGAAGTGGTCACTGATCCTAAAACTAAAGAACGTGTGCAATTGCCAGGTGAGCGTAT
TGGCCAAATCATGGTATTCAAAAACTTCGATCAATTAAGCTATGCCTATGTGCTAGAGAGCGAATTACCAATCAAGGTTG
GTGCAGGAATTCAAGCACCTCTTTTAGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

67.792

100

0.68