Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | JMO12_RS01795 | Genome accession | NZ_CP080552 |
| Coordinates | 406506..407009 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain HL18807 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 407441..462210 | 406506..407009 | flank | 432 |
Gene organization within MGE regions
Location: 406506..462210
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMO12_RS01795 (JMO12_000360) | ssbA | 406506..407009 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| JMO12_RS01800 (JMO12_000361) | rpsR | 407061..407303 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| JMO12_RS01805 (JMO12_000362) | - | 407579..408517 (-) | 939 | WP_001817700.1 | Abi family protein | - |
| JMO12_RS01810 (JMO12_000363) | - | 408556..409269 (-) | 714 | Protein_365 | tyrosine-type recombinase/integrase | - |
| JMO12_RS01815 (JMO12_000364) | selX | 409475..410086 (+) | 612 | WP_000475325.1 | staphylococcal enterotoxin-like toxin X | - |
| JMO12_RS01820 (JMO12_000365) | - | 410455..410823 (+) | 369 | WP_000849163.1 | YxeA family protein | - |
| JMO12_RS01825 (JMO12_000366) | - | 411004..411576 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| JMO12_RS01830 (JMO12_000367) | - | 411713..411976 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| JMO12_RS01835 (JMO12_000368) | - | 412276..412527 (+) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| JMO12_RS01840 (JMO12_000369) | - | 412566..412775 (-) | 210 | WP_000211677.1 | hypothetical protein | - |
| JMO12_RS01845 (JMO12_000370) | - | 412953..413534 (+) | 582 | WP_000158375.1 | histidine phosphatase family protein | - |
| JMO12_RS01850 (JMO12_000371) | - | 413600..413983 (-) | 384 | WP_000868259.1 | hypothetical protein | - |
| JMO12_RS01855 (JMO12_000372) | - | 414253..414879 (-) | 627 | WP_000746679.1 | NDxxF motif lipoprotein | - |
| JMO12_RS01860 (JMO12_000373) | - | 414952..415187 (-) | 236 | Protein_375 | hypothetical protein | - |
| JMO12_RS01865 (JMO12_000374) | ahpF | 415323..416846 (-) | 1524 | WP_000930514.1 | alkyl hydroperoxide reductase subunit F | - |
| JMO12_RS01870 (JMO12_000375) | ahpC | 416862..417431 (-) | 570 | WP_000052781.1 | alkyl hydroperoxide reductase subunit C | - |
| JMO12_RS01875 (JMO12_000376) | nfsA | 417923..418678 (+) | 756 | WP_114914751.1 | oxygen-insensitive NADPH nitroreductase | - |
| JMO12_RS01880 (JMO12_000377) | - | 418758..420146 (-) | 1389 | WP_220360775.1 | L-cystine transporter | - |
| JMO12_RS01885 (JMO12_000378) | - | 420231..420329 (+) | 99 | WP_001792089.1 | hypothetical protein | - |
| JMO12_RS01890 (JMO12_000379) | - | 420993..422312 (+) | 1320 | WP_001557163.1 | ISL3-like element IS1181 family transposase | - |
| JMO12_RS14695 | - | 422360..422431 (+) | 72 | WP_370591525.1 | hypothetical protein | - |
| JMO12_RS01895 (JMO12_000380) | - | 422644..423600 (-) | 957 | WP_000956137.1 | hypothetical protein | - |
| JMO12_RS01900 (JMO12_000381) | - | 423718..424380 (-) | 663 | WP_000394698.1 | hypothetical protein | - |
| JMO12_RS01905 (JMO12_000382) | - | 424523..424930 (-) | 408 | WP_000763767.1 | general stress protein | - |
| JMO12_RS01910 (JMO12_000383) | xpt | 425443..426021 (+) | 579 | WP_000421410.1 | xanthine phosphoribosyltransferase | - |
| JMO12_RS01915 (JMO12_000384) | pbuX | 426021..427289 (+) | 1269 | WP_000793018.1 | xanthine permease PbuX | - |
| JMO12_RS01920 (JMO12_000385) | guaB | 427327..428793 (+) | 1467 | WP_000264071.1 | IMP dehydrogenase | - |
| JMO12_RS01925 (JMO12_000386) | guaA | 428818..430359 (+) | 1542 | WP_000424963.1 | glutamine-hydrolyzing GMP synthase | - |
| JMO12_RS01930 (JMO12_000387) | - | 430427..431620 (-) | 1194 | WP_000237797.1 | site-specific integrase | - |
| JMO12_RS01935 (JMO12_000388) | - | 431647..431847 (-) | 201 | WP_000633907.1 | DUF3173 family protein | - |
| JMO12_RS01940 (JMO12_000389) | - | 432345..432575 (-) | 231 | WP_000845143.1 | helix-turn-helix domain-containing protein | - |
| JMO12_RS01945 (JMO12_000390) | - | 432572..432994 (-) | 423 | WP_000804879.1 | RNA polymerase sigma factor | - |
| JMO12_RS01955 (JMO12_000392) | - | 433525..433878 (+) | 354 | WP_001227350.1 | helix-turn-helix domain-containing protein | - |
| JMO12_RS01960 (JMO12_000393) | - | 433936..434124 (-) | 189 | WP_032506803.1 | cysteine-rich KTR domain-containing protein | - |
| JMO12_RS01965 (JMO12_000394) | tet(M) | 434222..436141 (-) | 1920 | WP_000691737.1 | tetracycline resistance ribosomal protection protein Tet(M) | - |
| JMO12_RS01970 (JMO12_000395) | - | 436157..436273 (-) | 117 | WP_001791010.1 | tetracycline resistance determinant leader peptide | - |
| JMO12_RS01975 (JMO12_000396) | - | 436518..437447 (-) | 930 | WP_000584387.1 | conjugal transfer protein | - |
| JMO12_RS01980 (JMO12_000397) | - | 437464..438486 (-) | 1023 | WP_000768373.1 | bifunctional lytic transglycosylase/C40 family peptidase | - |
| JMO12_RS01985 (JMO12_000398) | - | 438483..440510 (-) | 2028 | WP_000192393.1 | CD3337/EF1877 family mobilome membrane protein | - |
| JMO12_RS01990 (JMO12_000399) | - | 440507..442960 (-) | 2454 | WP_000331165.1 | ATP-binding protein | - |
| JMO12_RS01995 (JMO12_000400) | - | 442944..443339 (-) | 396 | WP_000723887.1 | conjugal transfer protein | - |
| JMO12_RS02000 (JMO12_000401) | - | 443411..444049 (-) | 639 | WP_000248477.1 | DUF6037 family protein | - |
| JMO12_RS02005 (JMO12_000402) | - | 444105..444605 (-) | 501 | WP_000425404.1 | antirestriction protein ArdA | - |
| JMO12_RS02010 (JMO12_000403) | - | 444666..445445 (-) | 780 | WP_000675717.1 | abortive infection family protein | - |
| JMO12_RS02015 (JMO12_000404) | - | 445487..445708 (-) | 222 | WP_001009054.1 | hypothetical protein | - |
| JMO12_RS02020 (JMO12_000405) | - | 445705..445995 (-) | 291 | WP_000055376.1 | hypothetical protein | - |
| JMO12_RS02025 (JMO12_000406) | mobT | 445992..447176 (-) | 1185 | WP_000426689.1 | MobT family relaxase | - |
| JMO12_RS02030 (JMO12_000407) | - | 447358..448761 (-) | 1404 | WP_001130244.1 | FtsK/SpoIIIE domain-containing protein | - |
| JMO12_RS02035 (JMO12_000408) | - | 448783..449556 (-) | 774 | WP_000185761.1 | hypothetical protein | - |
| JMO12_RS02040 (JMO12_000409) | - | 449566..449943 (-) | 378 | WP_001234191.1 | YdcP family protein | - |
| JMO12_RS02045 (JMO12_000410) | - | 449964..450278 (-) | 315 | WP_000421279.1 | YdcP family protein | - |
| JMO12_RS02050 (JMO12_000411) | - | 450478..452270 (-) | 1793 | Protein_413 | UvrD-helicase domain-containing protein | - |
| JMO12_RS02055 (JMO12_000412) | - | 452267..454456 (-) | 2190 | WP_000470931.1 | ATP-dependent endonuclease | - |
| JMO12_RS02060 (JMO12_000413) | - | 454590..455780 (-) | 1191 | WP_000997694.1 | IS256-like element ISLgar5 family transposase | - |
| JMO12_RS02065 (JMO12_000414) | - | 456274..456810 (-) | 537 | WP_000551643.1 | hypothetical protein | - |
| JMO12_RS02070 (JMO12_000415) | - | 457202..457906 (-) | 705 | WP_000041880.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| JMO12_RS02075 (JMO12_000416) | - | 458305..458577 (-) | 273 | WP_000159787.1 | transposase | - |
| JMO12_RS02080 (JMO12_000417) | - | 458838..458990 (-) | 153 | WP_000248844.1 | hypothetical protein | - |
| JMO12_RS02085 (JMO12_000418) | - | 459522..459881 (-) | 360 | WP_001021623.1 | DUF1304 domain-containing protein | - |
| JMO12_RS02090 (JMO12_000419) | - | 459900..460745 (-) | 846 | WP_001024371.1 | SDR family oxidoreductase | - |
| JMO12_RS02095 (JMO12_000420) | - | 461217..461897 (+) | 681 | WP_000669014.1 | superantigen-like protein SSL1 | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=593789 JMO12_RS01795 WP_000934799.1 406506..407009(+) (ssbA) [Staphylococcus aureus strain HL18807]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=593789 JMO12_RS01795 WP_000934799.1 406506..407009(+) (ssbA) [Staphylococcus aureus strain HL18807]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |