Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   KTJ85_RS08290 Genome accession   NZ_CP080509
Coordinates   1624137..1625387 (+) Length   416 a.a.
NCBI ID   WP_115997260.1    Uniprot ID   -
Organism   Bacillus sp. 7D3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1619137..1630387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTJ85_RS08260 (KTJ85_08260) yfmH 1619231..1620517 (+) 1287 WP_065981482.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  KTJ85_RS08265 (KTJ85_08265) ymfI 1620576..1621304 (+) 729 WP_212101670.1 elongation factor P 5-aminopentanone reductase -
  KTJ85_RS08270 (KTJ85_08270) - 1621380..1621637 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  KTJ85_RS08275 (KTJ85_08275) - 1621766..1622557 (+) 792 WP_065521268.1 YmfK family protein -
  KTJ85_RS08280 (KTJ85_08280) - 1622576..1623463 (+) 888 WP_065981483.1 RodZ domain-containing protein -
  KTJ85_RS08285 (KTJ85_08285) pgsA 1623538..1624119 (+) 582 WP_016936065.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KTJ85_RS08290 (KTJ85_08290) cinA 1624137..1625387 (+) 1251 WP_115997260.1 competence/damage-inducible protein A Machinery gene
  KTJ85_RS08295 (KTJ85_08295) recA 1625559..1626602 (+) 1044 WP_013352318.1 recombinase RecA Machinery gene
  KTJ85_RS08300 (KTJ85_08300) - 1626768..1627949 (+) 1182 WP_212101403.1 serine hydrolase -
  KTJ85_RS08305 (KTJ85_08305) rny 1628240..1629799 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 44975.22 Da        Isoelectric Point: 5.0599

>NTDB_id=593390 KTJ85_RS08290 WP_115997260.1 1624137..1625387(+) (cinA) [Bacillus sp. 7D3]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGTNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERAGEFFYGYDDTSLVKELSKACRQNGITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQNVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=593390 KTJ85_RS08290 WP_115997260.1 1624137..1625387(+) (cinA) [Bacillus sp. 7D3]
ATGGAAATAGCAAAAAAAGCGGAAATCATTGCAGTCGGCTCAGAGCTTCTGCTCGGCCAGATCGCCAATACGAATGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGCGTAAATGTGTTTTATCATACCGCTGTCGGAGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCGGAAGAGCGCTCAGACCTGATTATTTTTTCTGGCGGCCTCGGACCGACCAAGGACGATTTA
ACAAAAGAAACCATTGCAAACACTTTGGGGCGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTCGATTGAAGAGTATTT
CGCGAAAACAAAACGGACAATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAAGGCTCAGACGTTTTGGCGAATC
ACTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGACTTTATATGCTGCTCCCTGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTACAAATGAGAAGATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCGCAGCTTGAAGCTGATTTAGAAGATATCATTGATGCGCAGACGAACCCGACGATTG
CGCCGCTTGCTGCCGACGGCGAGGTCACGCTGCGTTTAACGGCGAAACATGCCGACGAAAAAGAAACAGAGCGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTGGAACGTGCCGGTGAATTTTTCTACGGATATGATGATACGTCGCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACGGAATCACGATTTCCTCTGCCGAAAGCTTTACCGGAGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCGGGGGGCGTTGTCTGCTATTCCGACAGCGTGAAACAGAATGTGCTCGGC
GTGAAAGCTGAAACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGCGCGAAAGAGCTTGCCGCCGGTGTAAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGAGTTGCGGGCCCCGATCCGCAGGAAGGGCATGCCCCGGGCCGCGTCT
TTATCGGTATTTCCGCGGAAGGGAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTTATTTTGAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-413)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.144

100

0.901
  cinA Streptococcus mitis NCTC 12261

48.086

100

0.483
  cinA Streptococcus mitis SK321

47.608

100

0.478
  cinA Streptococcus pneumoniae TIGR4

47.129

100

0.474
  cinA Streptococcus pneumoniae Rx1

47.129

100

0.474
  cinA Streptococcus pneumoniae R6

47.129

100

0.474
  cinA Streptococcus pneumoniae D39

46.89

100

0.471
  cinA Streptococcus mutans UA159

46.731

99.279

0.464
  cinA Streptococcus suis isolate S10

40.153

93.99

0.377