Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   K0V03_RS10425 Genome accession   NZ_CP080508
Coordinates   1960625..1961143 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain HD15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1955625..1966143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0V03_RS10395 (K0V03_10395) yyaJ 1956128..1957483 (+) 1356 WP_029318525.1 MFS transporter -
  K0V03_RS10400 (K0V03_10400) maa 1957517..1958071 (-) 555 WP_033884396.1 sugar O-acetyltransferase -
  K0V03_RS10405 (K0V03_10405) yyaH 1958089..1958469 (-) 381 WP_003244460.1 VOC family protein -
  K0V03_RS10410 (K0V03_10410) ccpB 1958525..1959460 (-) 936 WP_085185280.1 transcriptional regulator CcpB -
  K0V03_RS10415 (K0V03_10415) xth 1959519..1960277 (-) 759 WP_029726087.1 exodeoxyribonuclease III -
  K0V03_RS10420 (K0V03_10420) rpsR 1960342..1960581 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  K0V03_RS10425 (K0V03_10425) ssbA 1960625..1961143 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  K0V03_RS10430 (K0V03_10430) rpsF 1961184..1961471 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  K0V03_RS10435 (K0V03_10435) ychF 1961582..1962682 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  K0V03_RS10440 (K0V03_10440) yyaE 1962809..1964812 (-) 2004 WP_085185276.1 molybdopterin-dependent oxidoreductase -
  K0V03_RS10445 (K0V03_10445) yyzM 1964863..1965069 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=593320 K0V03_RS10425 WP_003219228.1 1960625..1961143(-) (ssbA) [Bacillus subtilis strain HD15]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=593320 K0V03_RS10425 WP_003219228.1 1960625..1961143(-) (ssbA) [Bacillus subtilis strain HD15]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378