Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   K0V03_RS01450 Genome accession   NZ_CP080508
Coordinates   245517..246587 (-) Length   356 a.a.
NCBI ID   WP_085186492.1    Uniprot ID   -
Organism   Bacillus subtilis strain HD15     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 240517..251587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0V03_RS01405 (K0V03_01405) tapA 240996..241757 (-) 762 WP_085186488.1 amyloid fiber anchoring/assembly protein TapA -
  K0V03_RS01410 (K0V03_01410) yqzG 242028..242354 (+) 327 WP_085186489.1 YqzG/YhdC family protein -
  K0V03_RS01415 (K0V03_01415) spoIITA 242396..242575 (-) 180 WP_003230176.1 YqzE family protein -
  K0V03_RS01420 (K0V03_01420) comGG 242647..243021 (-) 375 WP_021480019.1 ComG operon protein ComGG Machinery gene
  K0V03_RS01425 (K0V03_01425) comGF 243022..243405 (-) 384 WP_085186490.1 ComG operon protein ComGF Machinery gene
  K0V03_RS01430 (K0V03_01430) comGE 243431..243778 (-) 348 WP_046160583.1 ComG operon protein 5 Machinery gene
  K0V03_RS01435 (K0V03_01435) comGD 243762..244193 (-) 432 WP_024573390.1 comG operon protein ComGD Machinery gene
  K0V03_RS01440 (K0V03_01440) comGC 244183..244479 (-) 297 WP_024573391.1 comG operon protein ComGC Machinery gene
  K0V03_RS01445 (K0V03_01445) comGB 244493..245530 (-) 1038 WP_085186491.1 comG operon protein ComGB Machinery gene
  K0V03_RS01450 (K0V03_01450) comGA 245517..246587 (-) 1071 WP_085186492.1 competence protein ComGA Machinery gene
  K0V03_RS22135 - 246605..246997 (-) 393 WP_170948341.1 hypothetical protein -
  K0V03_RS01460 (K0V03_01460) corA 246999..247952 (-) 954 WP_015483432.1 magnesium transporter CorA -
  K0V03_RS01465 (K0V03_01465) yqhB 248095..249423 (+) 1329 WP_085186496.1 hemolysin family protein -
  K0V03_RS01470 (K0V03_01470) rsbRD 249476..250312 (-) 837 WP_021480027.1 RsbT co-antagonist protein RsbRD -
  K0V03_RS01480 (K0V03_01480) mgsR 250536..250916 (-) 381 WP_003230147.1 transcriptional regulator MgsR -
  K0V03_RS01485 (K0V03_01485) yqgY 251148..251393 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40488.67 Da        Isoelectric Point: 9.0175

>NTDB_id=593291 K0V03_RS01450 WP_085186492.1 245517..246587(-) (comGA) [Bacillus subtilis strain HD15]
MDSIEKLSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSTGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHDKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=593291 K0V03_RS01450 WP_085186492.1 245517..246587(-) (comGA) [Bacillus subtilis strain HD15]
TTGGATTCAATAGAAAAGTTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATCGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGACTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCCACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCAACTGGTTCAGGAAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCACAGGTCTGAAAGCAATTTTGCGCCATGATCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTGACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGCCAGTCAC
GAAATACCAGGAGAGCTAGTGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATTCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGATAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

99.157

100

0.992
  pilB Glaesserella parasuis strain SC1401

43.878

82.584

0.362