Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   K0V03_RS01445 Genome accession   NZ_CP080508
Coordinates   244493..245530 (-) Length   345 a.a.
NCBI ID   WP_085186491.1    Uniprot ID   -
Organism   Bacillus subtilis strain HD15     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 239493..250530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0V03_RS01395 (K0V03_01395) tasA 239591..240376 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  K0V03_RS01400 (K0V03_01400) sipW 240440..241012 (-) 573 WP_003230181.1 signal peptidase I SipW -
  K0V03_RS01405 (K0V03_01405) tapA 240996..241757 (-) 762 WP_085186488.1 amyloid fiber anchoring/assembly protein TapA -
  K0V03_RS01410 (K0V03_01410) yqzG 242028..242354 (+) 327 WP_085186489.1 YqzG/YhdC family protein -
  K0V03_RS01415 (K0V03_01415) spoIITA 242396..242575 (-) 180 WP_003230176.1 YqzE family protein -
  K0V03_RS01420 (K0V03_01420) comGG 242647..243021 (-) 375 WP_021480019.1 ComG operon protein ComGG Machinery gene
  K0V03_RS01425 (K0V03_01425) comGF 243022..243405 (-) 384 WP_085186490.1 ComG operon protein ComGF Machinery gene
  K0V03_RS01430 (K0V03_01430) comGE 243431..243778 (-) 348 WP_046160583.1 ComG operon protein 5 Machinery gene
  K0V03_RS01435 (K0V03_01435) comGD 243762..244193 (-) 432 WP_024573390.1 comG operon protein ComGD Machinery gene
  K0V03_RS01440 (K0V03_01440) comGC 244183..244479 (-) 297 WP_024573391.1 comG operon protein ComGC Machinery gene
  K0V03_RS01445 (K0V03_01445) comGB 244493..245530 (-) 1038 WP_085186491.1 comG operon protein ComGB Machinery gene
  K0V03_RS01450 (K0V03_01450) comGA 245517..246587 (-) 1071 WP_085186492.1 competence protein ComGA Machinery gene
  K0V03_RS22135 - 246605..246997 (-) 393 WP_170948341.1 hypothetical protein -
  K0V03_RS01460 (K0V03_01460) corA 246999..247952 (-) 954 WP_015483432.1 magnesium transporter CorA -
  K0V03_RS01465 (K0V03_01465) yqhB 248095..249423 (+) 1329 WP_085186496.1 hemolysin family protein -
  K0V03_RS01470 (K0V03_01470) rsbRD 249476..250312 (-) 837 WP_021480027.1 RsbT co-antagonist protein RsbRD -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39823.23 Da        Isoelectric Point: 9.6013

>NTDB_id=593290 K0V03_RS01445 WP_085186491.1 244493..245530(-) (comGB) [Bacillus subtilis strain HD15]
MIKIRKVWSLKDQARLLKRLGEMTAGGYTLLDGLRLMELQMNKRQAADLTDTVTFLREGAPFYQVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQSDQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDMLFVFF
QHIDLVIILLALFTAGIGIYYWLVFKKKSPARQMLICVRIPLVGKLVKLFNSYFFSLQLSSLLKSGLSIYDSLNAFKYQT
FLPFYRCEAEQLIERLKAGESIEAAICGSPFYETDFSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLLPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=593290 K0V03_RS01445 WP_085186491.1 244493..245530(-) (comGB) [Bacillus subtilis strain HD15]
ATGATAAAGATTAGAAAAGTCTGGTCGTTAAAGGATCAAGCCAGGTTATTAAAGCGGCTCGGTGAAATGACTGCGGGCGG
ATATACGCTTCTGGATGGATTACGCCTGATGGAACTTCAGATGAATAAGAGGCAGGCGGCTGACTTGACTGATACGGTCA
CTTTTTTGAGGGAAGGGGCTCCGTTTTATCAAGTACTAAAGAGTTTGTCATTTCATAAGGAAGCCGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCCATGATCCAGAGCGGAGAGCTGCTGGAACGAAAAATTGCACAGTCAGA
CCAGCTGAAAAGAGTGCTGCGCTATCCGCTTTTCCTCATTTTTACGGTCGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAGTTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGTTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTGGCTCTTTTTACAGCAGGTATCGGGATTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTGATTTGTGTCAGGATTCCTTTGGTTGGAAAGCTTGTCAAGCTGTTTAACAGTTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCAATTTATGACAGCCTTAATGCATTTAAATATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCTGAACAATTGATTGAACGGCTAAAAGCCGGTGAGTCAATTGAAGCCGCTATTTG
TGGAAGCCCTTTTTATGAAACTGATTTTTCAAAAGTCATATCTCACGGCCAGCTGAGCGGCCGATTGGATCGAGAGCTTT
TCACATACAGCCAGTTCATATTGCAGCGGCTGGAACACAAGGCGCAAAAATGGACAGGCATCCTTCAGCCGATGATTTAT
GGATTTGTTGCTGCAATGATCTTACTTGTGTATTTATCTATGCTCTTGCCTATGTATCAGATGATGAATCAAATGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(17-136)

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

96.594

93.623

0.904