Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K1X80_RS25635 Genome accession   NZ_CP080494
Coordinates   5680921..5681436 (-) Length   171 a.a.
NCBI ID   WP_017849542.1    Uniprot ID   A0A6I3WGC1
Organism   Pseudomonas sp. So3.2b     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5675921..5686436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1X80_RS25610 (K1X80_25610) - 5676015..5676767 (-) 753 WP_057960758.1 S9 family peptidase -
  K1X80_RS25615 (K1X80_25615) - 5676757..5677866 (-) 1110 WP_057960759.1 DUF3182 family protein -
  K1X80_RS25620 (K1X80_25620) - 5678362..5679345 (-) 984 WP_057960760.1 GlxA family transcriptional regulator -
  K1X80_RS25625 (K1X80_25625) - 5679442..5679990 (+) 549 WP_057960761.1 cysteine hydrolase family protein -
  K1X80_RS25630 (K1X80_25630) tam 5679994..5680755 (-) 762 WP_057960762.1 trans-aconitate 2-methyltransferase -
  K1X80_RS25635 (K1X80_25635) ssb 5680921..5681436 (-) 516 WP_017849542.1 single-stranded DNA-binding protein Machinery gene
  K1X80_RS25640 (K1X80_25640) - 5681446..5682840 (-) 1395 WP_198792002.1 MFS transporter -
  K1X80_RS25645 (K1X80_25645) uvrA 5683021..5685855 (+) 2835 WP_029299403.1 excinuclease ABC subunit UvrA -
  K1X80_RS25650 (K1X80_25650) bfr 5685923..5686387 (-) 465 WP_029299402.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18989.15 Da        Isoelectric Point: 5.9455

>NTDB_id=593260 K1X80_RS25635 WP_017849542.1 5680921..5681436(-) (ssb) [Pseudomonas sp. So3.2b]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAA
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=593260 K1X80_RS25635 WP_017849542.1 5680921..5681436(-) (ssb) [Pseudomonas sp. So3.2b]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCAGAGATCGCCGGTGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACAGAAATCGTGGTCGACATGCAAGGCAC
CATGCAATTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGTCCCGTCCGCAGCCAAGCCAGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAGCAGGCGGCACCACAGCCAGCCGCT
GACTTCGACAGTTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I3WGC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.286

100

0.596
  ssb Neisseria gonorrhoeae MS11

48.315

100

0.503
  ssb Glaesserella parasuis strain SC1401

44.792

100

0.503
  ssb Neisseria meningitidis MC58

46.591

100

0.48