Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M2J01_RS03705 Genome accession   NZ_CP096964
Coordinates   772519..773016 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain NY13936     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 767519..778016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2J01_RS03690 (M2J01_03690) bfr 767527..767991 (+) 465 WP_003093668.1 bacterioferritin -
  M2J01_RS03695 (M2J01_03695) uvrA 768063..770900 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  M2J01_RS03700 (M2J01_03700) - 771114..772502 (+) 1389 WP_058160746.1 MFS transporter -
  M2J01_RS03705 (M2J01_03705) ssb 772519..773016 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  M2J01_RS03710 (M2J01_03710) pchA 773105..774535 (-) 1431 WP_058160748.1 isochorismate synthase PchA -
  M2J01_RS03715 (M2J01_03715) pchB 774532..774837 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  M2J01_RS03720 (M2J01_03720) pchC 774837..775592 (-) 756 WP_003114687.1 pyochelin biosynthesis editing thioesterase PchC -
  M2J01_RS03725 (M2J01_03725) pchD 775589..777232 (-) 1644 WP_058160750.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=593080 M2J01_RS03705 WP_003114685.1 772519..773016(+) (ssb) [Pseudomonas aeruginosa strain NY13936]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=593080 M2J01_RS03705 WP_003114685.1 772519..773016(+) (ssb) [Pseudomonas aeruginosa strain NY13936]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGACCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAACTGCTCGGCGGCCGCCCCTCCGGCGACGACTCGCAGCGTGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAGCCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515