Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   K1T74_RS08870 Genome accession   NZ_CP080462
Coordinates   1913787..1914374 (-) Length   195 a.a.
NCBI ID   WP_001005366.1    Uniprot ID   A0A0K9UTP3
Organism   Vibrio cholerae strain ICDC-VC702     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1908787..1919374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T74_RS08850 - 1909015..1910280 (-) 1266 WP_025998897.1 YdgA family protein -
  K1T74_RS08855 - 1910503..1912458 (+) 1956 WP_001082988.1 ATP-binding protein -
  K1T74_RS08860 - 1912455..1912952 (+) 498 WP_001031967.1 response regulator -
  K1T74_RS08865 - 1913143..1913691 (+) 549 WP_001232641.1 hypothetical protein -
  K1T74_RS08870 tfoX 1913787..1914374 (-) 588 WP_001005366.1 TfoX/Sxy family DNA transformation protein Regulator
  K1T74_RS08875 - 1914752..1915672 (+) 921 WP_000019001.1 HDOD domain-containing protein -
  K1T74_RS08880 - 1915693..1916598 (+) 906 WP_000948497.1 lysine exporter LysO family protein -
  K1T74_RS08885 - 1916787..1917296 (+) 510 WP_000826868.1 hypothetical protein -
  K1T74_RS08890 panP 1917406..1919052 (+) 1647 WP_220105667.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22816.03 Da        Isoelectric Point: 6.9718

>NTDB_id=593055 K1T74_RS08870 WP_001005366.1 1913787..1914374(-) (tfoX) [Vibrio cholerae strain ICDC-VC702]
MNEQQFFDYVTKFGAYQKRSMFGGIGLFQHDAMYVLVSEDRIFVRGGEELDPELLALGCEKYRHVKKQTTATVNYYDITE
LYEQHHPELDSIIERSIQFSVNQREFQRSAASRRLRDLPNMQLTLERMVKKAGIDDVETFMSLGAPEVFNKVRQAYGSDV
DVKLLWKFAGAIEGIHWKLLQEPRKRQLLESCQQR

Nucleotide


Download         Length: 588 bp        

>NTDB_id=593055 K1T74_RS08870 WP_001005366.1 1913787..1914374(-) (tfoX) [Vibrio cholerae strain ICDC-VC702]
ATGAATGAGCAACAGTTTTTCGACTACGTAACTAAGTTTGGCGCCTACCAAAAACGCTCGATGTTTGGTGGTATTGGCTT
GTTTCAACACGACGCTATGTATGTGTTGGTCAGTGAAGACCGCATTTTTGTGCGTGGTGGAGAAGAGCTCGACCCTGAGC
TCTTGGCCTTAGGGTGCGAGAAATATCGCCATGTTAAAAAACAGACAACGGCAACCGTAAACTATTACGACATCACTGAA
CTGTATGAGCAACATCACCCTGAGCTAGACTCGATCATTGAACGCTCGATTCAGTTTTCTGTGAATCAGCGGGAATTTCA
ACGCTCAGCAGCCAGTCGTCGTCTACGGGATTTACCCAATATGCAACTGACTTTGGAGCGTATGGTAAAAAAAGCGGGCA
TTGACGATGTGGAAACTTTTATGAGCCTCGGTGCGCCAGAAGTGTTTAATAAGGTGCGTCAAGCTTATGGAAGTGATGTC
GATGTAAAACTACTGTGGAAGTTTGCGGGTGCGATTGAAGGCATTCACTGGAAATTGCTGCAAGAGCCGCGTAAGCGCCA
ACTGTTAGAAAGTTGTCAGCAGCGTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K9UTP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.