Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   Sta3580_RS10580 Genome accession   NZ_CP080458
Coordinates   2176496..2176834 (-) Length   112 a.a.
NCBI ID   WP_015900456.1    Uniprot ID   B9DNK7
Organism   Staphylococcus carnosus strain KCTC 3580     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2171496..2181834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Sta3580_RS10560 (Sta3580_10520) hemW 2171886..2173007 (-) 1122 WP_015900452.1 radical SAM family heme chaperone HemW -
  Sta3580_RS10565 (Sta3580_10525) lepA 2173076..2174899 (-) 1824 WP_015900453.1 translation elongation factor 4 -
  Sta3580_RS10570 (Sta3580_10530) rpsT 2175164..2175415 (+) 252 WP_015900454.1 30S ribosomal protein S20 -
  Sta3580_RS10575 (Sta3580_10535) holA 2175448..2176422 (-) 975 WP_015900455.1 DNA polymerase III subunit delta -
  Sta3580_RS10580 (Sta3580_10540) comEC 2176496..2176834 (-) 339 WP_015900456.1 hypothetical protein Machinery gene
  Sta3580_RS10585 (Sta3580_10545) - 2176849..2178732 (-) 1884 WP_015900457.1 ComEC/Rec2 family competence protein -
  Sta3580_RS10590 (Sta3580_10550) - 2178740..2179201 (-) 462 WP_015900458.1 ComE operon protein 2 -
  Sta3580_RS10595 (Sta3580_10555) - 2179276..2179944 (-) 669 WP_015900459.1 ComEA family DNA-binding protein -
  Sta3580_RS10600 (Sta3580_10560) - 2179993..2180709 (-) 717 WP_015900460.1 class I SAM-dependent methyltransferase -
  Sta3580_RS10605 (Sta3580_10565) rsfS 2180712..2181062 (-) 351 WP_015900461.1 ribosome silencing factor -
  Sta3580_RS10610 (Sta3580_10570) yqeK 2181063..2181647 (-) 585 WP_015900462.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12612.39 Da        Isoelectric Point: 10.1713

>NTDB_id=593011 Sta3580_RS10580 WP_015900456.1 2176496..2176834(-) (comEC) [Staphylococcus carnosus strain KCTC 3580]
MAIIKTRKYNILTTGDATVKNESKLLANYLIPRIDILKVGHHGSKTSSSEKFINSIHPHYSVISSGKNNAYKLPNKEVIG
RLNKVNSQIYNTQKNGQITFNLDDEIQVLTEQ

Nucleotide


Download         Length: 339 bp        

>NTDB_id=593011 Sta3580_RS10580 WP_015900456.1 2176496..2176834(-) (comEC) [Staphylococcus carnosus strain KCTC 3580]
ATGGCAATCATTAAAACACGTAAATATAATATACTAACCACTGGTGATGCAACTGTTAAAAATGAATCAAAATTATTAGC
TAATTACTTAATTCCTAGAATTGATATTTTGAAAGTAGGCCATCATGGCAGTAAAACAAGTTCTAGTGAAAAGTTTATAA
ATAGTATCCATCCTCATTATAGCGTTATTTCGAGTGGTAAAAACAACGCATATAAACTTCCAAATAAAGAAGTAATAGGC
CGTCTAAATAAAGTAAATTCTCAAATATATAATACTCAAAAAAATGGACAGATAACATTTAATCTAGATGATGAAATACA
AGTATTAACAGAACAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9DNK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Staphylococcus aureus N315

61.224

87.5

0.536
  comEC Staphylococcus aureus MW2

61.224

87.5

0.536
  comEC Lactococcus lactis subsp. cremoris KW2

48.864

78.571

0.384
  rec2 Haemophilus influenzae Rd KW20

42.157

91.071

0.384