Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   Sta0113_RS04140 Genome accession   NZ_CP080457
Coordinates   867243..867758 (+) Length   171 a.a.
NCBI ID   WP_048762494.1    Uniprot ID   -
Organism   Staphylococcus hominis subsp. hominis strain WiKim0113     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 862243..872758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Sta0113_RS04110 (Sta0113_04065) - 863254..864078 (+) 825 WP_145421945.1 ParB/RepB/Spo0J family partition protein -
  Sta0113_RS04115 (Sta0113_04070) - 864205..865083 (+) 879 WP_048762501.1 mechanosensitive ion channel family protein -
  Sta0113_RS04120 (Sta0113_04075) - 865104..865307 (+) 204 WP_048762499.1 DUF951 domain-containing protein -
  Sta0113_RS04125 (Sta0113_04080) ychF 865319..866416 (+) 1098 WP_002447976.1 redox-regulated ATPase YchF -
  Sta0113_RS04130 (Sta0113_04085) - 866485..866676 (-) 192 WP_048762495.1 hypothetical protein -
  Sta0113_RS04135 (Sta0113_04090) rpsF 866925..867221 (+) 297 WP_002447961.1 30S ribosomal protein S6 -
  Sta0113_RS04140 (Sta0113_04095) ssbA 867243..867758 (+) 516 WP_048762494.1 single-stranded DNA-binding protein Machinery gene
  Sta0113_RS04145 (Sta0113_04100) rpsR 867800..868042 (+) 243 WP_002447994.1 30S ribosomal protein S18 -
  Sta0113_RS04150 (Sta0113_04105) - 868225..869169 (+) 945 WP_048762530.1 hypothetical protein -
  Sta0113_RS04155 (Sta0113_04110) - 869228..869485 (-) 258 WP_048762493.1 helix-turn-helix transcriptional regulator -
  Sta0113_RS04160 (Sta0113_04115) - 869805..870053 (+) 249 WP_002447983.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  Sta0113_RS04165 (Sta0113_04120) - 870445..872187 (+) 1743 WP_248855348.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18818.30 Da        Isoelectric Point: 4.7306

>NTDB_id=592967 Sta0113_RS04140 WP_048762494.1 867243..867758(+) (ssbA) [Staphylococcus hominis subsp. hominis strain WiKim0113]
MINRVVLVGRLTKDPEYRSTPSGVSVATFTLAVNRTFTNAQGEREADFINVVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNAQGGQRNQGNNDFQDYGQGFGGSQSGQNTSYNNNNNRASNNNQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=592967 Sta0113_RS04140 WP_048762494.1 867243..867758(+) (ssbA) [Staphylococcus hominis subsp. hominis strain WiKim0113]
ATGATAAATCGAGTTGTATTAGTAGGTCGTTTAACTAAGGATCCAGAATACAGAAGTACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAACCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACGTTGTTGTAT
TTAGAAGACAAGCAGAAAACGTAAATAACTATCTTTCAAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGTATATTTGTCACTGAAGTTGTAGCGGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCACAAGGTGGACAACGTAATCAAGGAAATAATGATTTCCAAGATTATGGCCAAGGATTTGGTGGTTCACAATCAGGAC
AAAATACATCTTATAATAATAATAACAATCGTGCATCAAACAATAATCAATCAGATAACCCATTTGCAAATGCGAATGGT
CCAATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.889

100

0.673
  ssb Latilactobacillus sakei subsp. sakei 23K

54.913

100

0.556
  ssb Glaesserella parasuis strain SC1401

34.043

100

0.374
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

61.988

0.374