Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K0I63_RS02710 Genome accession   NZ_CP080420
Coordinates   602657..603325 (+) Length   222 a.a.
NCBI ID   WP_220082448.1    Uniprot ID   -
Organism   Shewanella rhizosphaerae strain FJAT-53764     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 597657..608325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0I63_RS02700 (K0I63_02700) uvrA 598189..601014 (-) 2826 WP_220082447.1 excinuclease ABC subunit UvrA -
  K0I63_RS02705 (K0I63_02705) - 601217..602584 (+) 1368 WP_144199796.1 MFS transporter -
  K0I63_RS02710 (K0I63_02710) ssb 602657..603325 (+) 669 WP_220082448.1 single-stranded DNA-binding protein Machinery gene
  K0I63_RS02715 (K0I63_02715) dusA 603536..604510 (+) 975 WP_258406927.1 tRNA dihydrouridine(20/20a) synthase DusA -
  K0I63_RS02720 (K0I63_02720) - 604798..605076 (+) 279 WP_220073014.1 hypothetical protein -
  K0I63_RS02725 (K0I63_02725) - 605257..605463 (+) 207 WP_220082450.1 PspC domain-containing protein -
  K0I63_RS02730 (K0I63_02730) - 605482..605841 (+) 360 WP_011864345.1 hypothetical protein -
  K0I63_RS02735 (K0I63_02735) - 605857..606594 (-) 738 WP_220082451.1 enoyl-CoA hydratase -
  K0I63_RS02740 (K0I63_02740) - 606644..607111 (+) 468 WP_220082452.1 copper chaperone PCu(A)C -
  K0I63_RS02745 (K0I63_02745) - 607124..608095 (+) 972 WP_011864348.1 DUF2333 family protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24531.88 Da        Isoelectric Point: 6.4803

>NTDB_id=592799 K0I63_RS02710 WP_220082448.1 602657..603325(+) (ssb) [Shewanella rhizosphaerae strain FJAT-53764]
MASRGVNKVILVGNLGKDPEVRYMPNGNAVANFTVATSESWKDQQGQMQERTEWHNIVMYRRLAEIAGEYLKKGSKVYLE
GKLQTSKWQDQQTGQDRYKTEINVNEMQMLDSRGQGQGQGGQGGQQGYGAPQQQNQYAPQQSAPAARPQQPQHSAPQGGY
GAQQQPAPQQQGYGAQPQQAPAYAPKPQAAPQQQAPQQRPAPQPQQNFTPDLDDGWDDDIPF

Nucleotide


Download         Length: 669 bp        

>NTDB_id=592799 K0I63_RS02710 WP_220082448.1 602657..603325(+) (ssb) [Shewanella rhizosphaerae strain FJAT-53764]
ATGGCCAGTCGTGGTGTCAATAAGGTAATTTTGGTCGGTAACCTAGGGAAAGATCCTGAGGTTCGTTACATGCCAAACGG
CAACGCCGTAGCCAACTTTACAGTGGCGACCAGTGAGTCTTGGAAAGACCAGCAAGGTCAGATGCAAGAACGTACAGAAT
GGCACAACATTGTAATGTACCGTCGTCTTGCGGAGATCGCCGGTGAGTACCTGAAGAAGGGCTCGAAAGTGTATCTGGAA
GGCAAACTGCAGACCAGCAAGTGGCAGGATCAGCAGACCGGACAAGATCGCTACAAGACAGAGATCAACGTTAACGAGAT
GCAGATGCTGGATAGCCGTGGCCAAGGCCAAGGCCAAGGCGGTCAAGGTGGCCAGCAAGGTTACGGTGCGCCACAACAGC
AAAACCAGTACGCGCCACAGCAGTCGGCGCCAGCCGCGCGTCCACAGCAGCCACAGCACTCGGCTCCTCAAGGTGGGTAC
GGTGCCCAGCAACAGCCTGCACCACAGCAGCAAGGTTATGGCGCTCAGCCACAGCAGGCCCCTGCCTATGCACCTAAGCC
GCAGGCGGCTCCACAACAGCAAGCGCCGCAGCAGCGTCCAGCACCTCAGCCACAGCAGAACTTCACGCCTGATCTGGATG
ACGGTTGGGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.78

100

0.509
  ssb Glaesserella parasuis strain SC1401

49.315

98.649

0.486
  ssb Neisseria meningitidis MC58

46.544

97.748

0.455
  ssb Neisseria gonorrhoeae MS11

46.544

97.748

0.455