Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K0H81_RS02765 Genome accession   NZ_CP080417
Coordinates   616120..616776 (+) Length   218 a.a.
NCBI ID   WP_220059816.1    Uniprot ID   -
Organism   Shewanella halotolerans strain FJAT-53555     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 611120..621776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0H81_RS02755 (K0H81_02755) uvrA 611652..614477 (-) 2826 WP_220059815.1 excinuclease ABC subunit UvrA -
  K0H81_RS02760 (K0H81_02760) - 614680..616047 (+) 1368 WP_144199796.1 MFS transporter -
  K0H81_RS02765 (K0H81_02765) ssb 616120..616776 (+) 657 WP_220059816.1 single-stranded DNA-binding protein Machinery gene
  K0H81_RS02770 (K0H81_02770) dusA 616972..617961 (+) 990 WP_220059817.1 tRNA dihydrouridine(20/20a) synthase DusA -
  K0H81_RS02775 (K0H81_02775) - 618248..618526 (+) 279 WP_220059818.1 hypothetical protein -
  K0H81_RS02780 (K0H81_02780) - 618707..618913 (+) 207 WP_220059819.1 PspC domain-containing protein -
  K0H81_RS02785 (K0H81_02785) - 618932..619291 (+) 360 WP_220059820.1 hypothetical protein -
  K0H81_RS02790 (K0H81_02790) - 619307..620044 (-) 738 WP_144199784.1 enoyl-CoA hydratase -
  K0H81_RS02795 (K0H81_02795) - 620094..620561 (+) 468 WP_220059821.1 copper chaperone PCu(A)C -
  K0H81_RS02800 (K0H81_02800) - 620574..621545 (+) 972 WP_011864348.1 DUF2333 family protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24138.48 Da        Isoelectric Point: 5.9284

>NTDB_id=592729 K0H81_RS02765 WP_220059816.1 616120..616776(+) (ssb) [Shewanella halotolerans strain FJAT-53555]
MASRGVNKVILVGNLGKDPEVRYMPNGNAVANFTVATSESWKDQQGQMQERTEWHNIVMYRRLAEIAGEYLKKGSKVYLE
GKLQTSKWQDQQTGQDRYKTEINVNEMQMLDSRGQGQGGQGGQQGYGAPQQQNQYAPQQSAPAARPQQPQQSAPQGGYGA
QQQPQPQQGYGAQPQQAPAYAPKPQAAPQQAPQQRPAPQPQQNFTPDLDDGWDDDIPF

Nucleotide


Download         Length: 657 bp        

>NTDB_id=592729 K0H81_RS02765 WP_220059816.1 616120..616776(+) (ssb) [Shewanella halotolerans strain FJAT-53555]
ATGGCCAGTCGTGGTGTCAATAAGGTAATTTTGGTCGGTAACCTGGGGAAAGATCCCGAGGTTCGTTACATGCCAAACGG
CAACGCCGTAGCCAACTTTACAGTGGCGACCAGTGAGTCTTGGAAAGACCAGCAAGGTCAGATGCAAGAACGTACAGAAT
GGCACAACATTGTAATGTACCGTCGTCTTGCGGAGATCGCCGGTGAGTACCTGAAGAAGGGCTCGAAAGTGTATCTGGAA
GGTAAACTGCAGACCAGCAAGTGGCAGGATCAGCAGACCGGACAAGATCGCTACAAGACAGAGATCAACGTTAACGAGAT
GCAGATGCTGGATAGCCGTGGCCAAGGCCAAGGCGGTCAAGGTGGCCAGCAAGGTTACGGTGCGCCGCAACAGCAAAACC
AGTACGCACCACAGCAATCGGCGCCGGCCGCGCGTCCACAGCAGCCGCAACAATCGGCTCCTCAAGGTGGGTACGGTGCC
CAGCAACAGCCACAGCCACAGCAAGGTTATGGCGCTCAGCCACAGCAGGCCCCTGCCTATGCGCCTAAGCCACAGGCGGC
ACCGCAACAGGCACCGCAGCAGCGTCCAGCACCACAGCCACAGCAGAACTTCACGCCTGATCTGGATGACGGTTGGGACG
ACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.233

98.624

0.495
  ssb Neisseria meningitidis MC58

47.887

97.706

0.468
  ssb Neisseria gonorrhoeae MS11

47.887

97.706

0.468
  ssb Vibrio cholerae strain A1552

61.491

73.853

0.454