Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K0H79_RS02675 Genome accession   NZ_CP080415
Coordinates   610664..611362 (+) Length   232 a.a.
NCBI ID   WP_220066617.1    Uniprot ID   -
Organism   Shewanella sp. FJAT-52076     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 605664..616362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0H79_RS02665 (K0H79_02665) uvrA 606175..609003 (-) 2829 WP_220077214.1 excinuclease ABC subunit UvrA -
  K0H79_RS02670 (K0H79_02670) - 609261..610628 (+) 1368 WP_220077215.1 MFS transporter -
  K0H79_RS02675 (K0H79_02675) ssb 610664..611362 (+) 699 WP_220066617.1 single-stranded DNA-binding protein Machinery gene
  K0H79_RS02680 (K0H79_02680) - 611485..612285 (-) 801 WP_220078070.1 3-hydroxybutyrate dehydrogenase -
  K0H79_RS02685 (K0H79_02685) - 612505..613218 (+) 714 WP_220066618.1 CoA transferase subunit A -
  K0H79_RS02690 (K0H79_02690) - 613228..613893 (+) 666 WP_220077216.1 CoA transferase subunit B -
  K0H79_RS02695 (K0H79_02695) - 614019..614966 (+) 948 WP_220077217.1 PHB depolymerase family esterase -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25278.51 Da        Isoelectric Point: 5.2341

>NTDB_id=592683 K0H79_RS02675 WP_220066617.1 610664..611362(+) (ssb) [Shewanella sp. FJAT-52076]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDNQGQQQERTEWHRVVMFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYTTEIVVDQSGSMQMLGGRNQGQGQGAPAAGQGGQSQGGYSAPAQNQYAPAPQAAQPSYSAPAQ
QPQQAAYQQPQQAQGGYGQQAPQQQGGYQSKPQQSAPAYQPQQAPQQRPAPQPQQQNYTPDLDDGWDDDIPF

Nucleotide


Download         Length: 699 bp        

>NTDB_id=592683 K0H79_RS02675 WP_220066617.1 610664..611362(+) (ssb) [Shewanella sp. FJAT-52076]
ATGGCCAGTCGTGGTGTGAATAAAGTGATTCTGGTAGGTAACCTTGGGCAAGACCCTGAGGTGCGCTACATGCCCAACGG
CAATGCGGTAGCCAATATCACGGTCGCCACCAGTGAGTCCTGGAAGGACAACCAAGGTCAGCAGCAGGAGCGTACCGAAT
GGCACCGTGTGGTGATGTTTGGCAAGCTGGCTGAAATCACCGGTGAGTACCTGCGCAAGGGCTCTCAGGTATACCTGGAA
GGCAAGCTGCAAACCCGTAAGTGGAAAGATCAGAGTGGTCAGGACAGATACACCACTGAAATCGTAGTGGATCAGAGCGG
CAGCATGCAGATGCTTGGTGGACGCAACCAGGGCCAGGGTCAGGGCGCGCCTGCAGCTGGTCAGGGTGGCCAGTCTCAGG
GCGGTTACAGCGCACCGGCTCAAAACCAATACGCACCGGCGCCGCAGGCCGCACAGCCAAGCTACAGCGCTCCTGCACAG
CAGCCTCAGCAAGCGGCTTATCAGCAGCCACAGCAGGCTCAGGGTGGTTATGGTCAGCAGGCGCCACAGCAGCAGGGCGG
TTATCAGAGCAAGCCTCAGCAGTCTGCTCCGGCTTACCAGCCACAGCAGGCACCACAGCAGCGTCCAGCGCCTCAGCCAC
AGCAGCAAAACTACACCCCTGATCTGGATGATGGCTGGGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.814

100

0.547
  ssb Glaesserella parasuis strain SC1401

45.259

100

0.453
  ssb Neisseria gonorrhoeae MS11

54.217

71.552

0.388
  ssb Neisseria meningitidis MC58

53.659

70.69

0.379