Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K0H59_RS18150 Genome accession   NZ_CP080411
Coordinates   4151542..4152249 (-) Length   235 a.a.
NCBI ID   WP_126511989.1    Uniprot ID   -
Organism   Shewanella sp. FJAT-51649     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4135578..4152249 4151542..4152249 within 0


Gene organization within MGE regions


Location: 4135578..4152249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0H59_RS18105 (K0H59_18105) - 4136114..4136374 (+) 261 WP_000533826.1 hypothetical protein -
  K0H59_RS18110 (K0H59_18110) - 4136581..4137612 (+) 1032 WP_220053942.1 ABC-three component system protein -
  K0H59_RS18115 (K0H59_18115) - 4137605..4138081 (+) 477 WP_220053943.1 ABC-three component system middle component 2 -
  K0H59_RS18120 (K0H59_18120) - 4138078..4139883 (+) 1806 WP_220053944.1 hypothetical protein -
  K0H59_RS18125 (K0H59_18125) - 4140247..4145907 (-) 5661 WP_220053945.1 ATP-binding protein -
  K0H59_RS18130 (K0H59_18130) - 4146090..4146566 (-) 477 WP_032471333.1 hypothetical protein -
  K0H59_RS18135 (K0H59_18135) - 4146559..4148568 (-) 2010 WP_220053946.1 hypothetical protein -
  K0H59_RS18140 (K0H59_18140) - 4148561..4150144 (-) 1584 WP_220053947.1 site-specific integrase -
  K0H59_RS18145 (K0H59_18145) - 4150150..4151322 (-) 1173 WP_089072043.1 site-specific integrase -
  K0H59_RS18150 (K0H59_18150) ssb 4151542..4152249 (-) 708 WP_126511989.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 25600.98 Da        Isoelectric Point: 5.7610

>NTDB_id=592608 K0H59_RS18150 WP_126511989.1 4151542..4152249(-) (ssb) [Shewanella sp. FJAT-51649]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVLFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGGRNQGQSQGQGQGAPMGGMQQNAGYQAAPAQTAPAQNQYAPAQQSYQ
APAQQPQSGYNQQPAQQSYGQQQQSHAQPQQGGYAPKPAAPAYQAPAAPAQRPAPQPQQNFTPDLDDGWDDDIPF

Nucleotide


Download         Length: 708 bp        

>NTDB_id=592608 K0H59_RS18150 WP_126511989.1 4151542..4152249(-) (ssb) [Shewanella sp. FJAT-51649]
ATGGCCAGTCGTGGTGTTAACAAGGTAATTTTGGTTGGCAATTTGGGACAAGATCCAGAAGTACGTTACATGCCAAACGG
TAACGCAGTCGCTAACATCACAGTAGCGACCAGCGAATCGTGGAAGGACCAACAAGGTCAACAGCAAGAGCGTACTGAAT
GGCACCGTGTGGTTCTGTTTGGCAAGTTGGCTGAAATTACGGGTGAGTACCTGCGTAAAGGTTCACAGGTTTACCTCGAA
GGTAAACTGCAAACGCGTAAGTGGAAAGACCAAAGCGGTCAAGATCGTTACAGCACTGAAGTGGTTATCGACCAAAGCGG
TAGCATGCAAATGTTAGGCGGCCGCAATCAAGGCCAAAGTCAAGGTCAAGGCCAAGGTGCTCCTATGGGCGGCATGCAAC
AAAACGCGGGTTACCAAGCGGCTCCTGCTCAAACTGCGCCAGCGCAAAACCAATACGCGCCCGCACAGCAAAGTTACCAA
GCACCTGCACAGCAGCCACAATCTGGCTACAATCAGCAGCCTGCTCAGCAAAGCTATGGCCAGCAACAGCAATCCCATGC
TCAGCCACAGCAAGGTGGTTATGCGCCTAAGCCTGCTGCACCAGCCTATCAAGCACCAGCAGCACCTGCACAACGTCCAG
CGCCACAGCCACAACAAAACTTCACCCCAGATTTGGATGACGGTTGGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.165

100

0.536
  ssb Glaesserella parasuis strain SC1401

44.828

98.723

0.443
  ssb Neisseria gonorrhoeae MS11

41.026

99.574

0.409
  ssb Neisseria meningitidis MC58

41.379

98.723

0.409