Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | PP4_RS09205 | Genome accession | NC_021505 |
| Coordinates | 2090115..2090573 (-) | Length | 152 a.a. |
| NCBI ID | WP_016498916.1 | Uniprot ID | - |
| Organism | Pseudomonas putida NBRC 14164 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2083193..2100525 | 2090115..2090573 | within | 0 |
Gene organization within MGE regions
Location: 2083193..2100525
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PP4_RS09155 (PP4_18000) | sohB | 2083193..2084212 (+) | 1020 | WP_016498905.1 | protease SohB | - |
| PP4_RS09165 (PP4_18010) | - | 2084541..2085590 (-) | 1050 | WP_016498906.1 | tyrosine-type recombinase/integrase | - |
| PP4_RS09170 (PP4_18020) | - | 2085592..2085837 (-) | 246 | WP_016498907.1 | DUF4224 domain-containing protein | - |
| PP4_RS09175 (PP4_18030) | - | 2085877..2086428 (-) | 552 | WP_016498908.1 | hypothetical protein | - |
| PP4_RS09180 (PP4_18040) | - | 2086549..2086770 (+) | 222 | WP_016498909.1 | hypothetical protein | - |
| PP4_RS09185 (PP4_18050) | - | 2086858..2087511 (-) | 654 | Protein_1821 | DUF2786 domain-containing protein | - |
| PP4_RS09190 | - | 2087540..2088484 (+) | 945 | WP_162471771.1 | hypothetical protein | - |
| PP4_RS09195 | - | 2088715..2089132 (-) | 418 | Protein_1823 | hypothetical protein | - |
| PP4_RS09200 (PP4_18090) | - | 2089230..2089829 (+) | 600 | WP_016498914.1 | hypothetical protein | - |
| PP4_RS09205 (PP4_18110) | ssb | 2090115..2090573 (-) | 459 | WP_016498916.1 | single-stranded DNA-binding protein | Machinery gene |
| PP4_RS09210 (PP4_18120) | - | 2090570..2090794 (-) | 225 | WP_016498917.1 | hypothetical protein | - |
| PP4_RS09215 (PP4_18130) | - | 2090794..2091168 (+) | 375 | WP_016498918.1 | DUF3168 domain-containing protein | - |
| PP4_RS09220 (PP4_18140) | - | 2091224..2091724 (+) | 501 | WP_016498919.1 | hypothetical protein | - |
| PP4_RS09225 (PP4_18150) | - | 2091737..2092078 (+) | 342 | WP_016498920.1 | hypothetical protein | - |
| PP4_RS28720 (PP4_18160) | - | 2092409..2092888 (+) | 480 | WP_016498921.1 | hypothetical protein | - |
| PP4_RS27480 (PP4_18170) | - | 2092959..2093852 (+) | 894 | WP_016498922.1 | hypothetical protein | - |
| PP4_RS27485 (PP4_18180) | - | 2093849..2094733 (+) | 885 | WP_016498923.1 | hypothetical protein | - |
| PP4_RS09240 (PP4_18190) | - | 2094760..2094957 (+) | 198 | WP_016498924.1 | hypothetical protein | - |
| PP4_RS09250 (PP4_18200) | - | 2095311..2095673 (+) | 363 | WP_016498925.1 | VOC family protein | - |
| PP4_RS09255 (PP4_18210) | - | 2095975..2096337 (+) | 363 | WP_016498926.1 | hypothetical protein | - |
| PP4_RS09260 (PP4_18220) | - | 2096594..2097019 (-) | 426 | WP_016498927.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| PP4_RS29825 (PP4_18230) | - | 2097068..2097328 (-) | 261 | WP_041167671.1 | type II toxin-antitoxin system HicA family toxin | - |
| PP4_RS29500 | - | 2097312..2097554 (-) | 243 | WP_080642775.1 | Pathogenicity locus | - |
| PP4_RS09270 (PP4_18240) | - | 2097642..2098285 (+) | 644 | Protein_1839 | putative metallopeptidase | - |
| PP4_RS09275 (PP4_18250) | - | 2098386..2098706 (-) | 321 | WP_016498930.1 | hypothetical protein | - |
| PP4_RS09280 (PP4_18260) | - | 2098735..2099454 (-) | 720 | WP_016498931.1 | SOS response-associated peptidase family protein | - |
| PP4_RS09285 (PP4_18270) | - | 2099632..2100525 (-) | 894 | WP_016498932.1 | LysR family transcriptional regulator | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 17179.98 Da Isoelectric Point: 7.2440
>NTDB_id=59242 PP4_RS09205 WP_016498916.1 2090115..2090573(-) (ssb) [Pseudomonas putida NBRC 14164]
MSRGVNKVSLVGTCGQDPDVRYLPNGNAVTNLSLATSEQWTDNQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGSRPQGHQTGQIPDRQPRQQRPARQQQNQQSAPPDHDSFDD
MSRGVNKVSLVGTCGQDPDVRYLPNGNAVTNLSLATSEQWTDNQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGSRPQGHQTGQIPDRQPRQQRPARQQQNQQSAPPDHDSFDD
Nucleotide
Download Length: 459 bp
>NTDB_id=59242 PP4_RS09205 WP_016498916.1 2090115..2090573(-) (ssb) [Pseudomonas putida NBRC 14164]
ATGAGTCGCGGGGTCAACAAGGTCAGTTTGGTAGGAACCTGCGGCCAAGACCCTGACGTGCGCTACCTGCCGAACGGCAA
CGCCGTCACAAACCTCAGCCTGGCCACAAGCGAGCAGTGGACTGACAACCAGTCGGGGCAGAAGGTCGAGCGCACAGAGT
GGCACCGGGTGTCGCTGTTCGGAAAGGTCGCCGAGATTGCCGGCGAATACCTGCGAAAGGGCTCCCAGTGCTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAGAAGGACGGCATCAAGCGCTACACCACGGAAATCATCGTGGACATCAACGGGAC
CATGCAGCTACTCGGTAGCCGGCCGCAGGGTCATCAAACAGGGCAAATCCCCGATAGGCAGCCACGTCAACAACGCCCCG
CCCGCCAGCAGCAGAACCAGCAGTCAGCGCCGCCTGACCACGACAGCTTCGACGACTAA
ATGAGTCGCGGGGTCAACAAGGTCAGTTTGGTAGGAACCTGCGGCCAAGACCCTGACGTGCGCTACCTGCCGAACGGCAA
CGCCGTCACAAACCTCAGCCTGGCCACAAGCGAGCAGTGGACTGACAACCAGTCGGGGCAGAAGGTCGAGCGCACAGAGT
GGCACCGGGTGTCGCTGTTCGGAAAGGTCGCCGAGATTGCCGGCGAATACCTGCGAAAGGGCTCCCAGTGCTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAGAAGGACGGCATCAAGCGCTACACCACGGAAATCATCGTGGACATCAACGGGAC
CATGCAGCTACTCGGTAGCCGGCCGCAGGGTCATCAAACAGGGCAAATCCCCGATAGGCAGCCACGTCAACAACGCCCCG
CCCGCCAGCAGCAGAACCAGCAGTCAGCGCCGCCTGACCACGACAGCTTCGACGACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
56.494 |
100 |
0.572 |
| ssb | Neisseria gonorrhoeae MS11 |
47.368 |
100 |
0.474 |
| ssb | Neisseria meningitidis MC58 |
46 |
98.684 |
0.454 |
| ssb | Glaesserella parasuis strain SC1401 |
54.622 |
78.289 |
0.428 |