Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KY494_RS18905 Genome accession   NZ_CP080377
Coordinates   4217126..4217644 (+) Length   172 a.a.
NCBI ID   WP_071075050.1    Uniprot ID   A0A4Y6RHB0
Organism   Janthinobacterium sp. PAMC25594     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4212126..4222644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KY494_RS18900 (KY494_18900) uvrA 4213895..4216744 (-) 2850 WP_219135829.1 excinuclease ABC subunit UvrA -
  KY494_RS18905 (KY494_18905) ssb 4217126..4217644 (+) 519 WP_071075050.1 single-stranded DNA-binding protein Machinery gene
  KY494_RS18910 (KY494_18910) - 4217868..4219319 (+) 1452 WP_258194324.1 UbiA family prenyltransferase -
  KY494_RS18915 (KY494_18915) - 4219316..4219681 (+) 366 WP_219887835.1 EamA family transporter -
  KY494_RS29820 - 4219681..4220109 (+) 429 WP_258194325.1 hypothetical protein -
  KY494_RS29825 - 4220116..4220922 (+) 807 WP_258194326.1 hypothetical protein -
  KY494_RS18925 (KY494_18925) - 4220943..4221359 (-) 417 WP_219887836.1 hypothetical protein -
  KY494_RS18930 (KY494_18930) - 4221360..4221632 (+) 273 WP_219887837.1 hypothetical protein -
  KY494_RS18935 (KY494_18935) - 4221729..4222154 (+) 426 WP_219887838.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18249.40 Da        Isoelectric Point: 5.9416

>NTDB_id=592391 KY494_RS18905 WP_071075050.1 4217126..4217644(+) (ssb) [Janthinobacterium sp. PAMC25594]
MASVNKVIIVGNLGRDPEIRYMPSGDAIANIAVATSYKSKDRNTGEQKELTEWHRISFFGRLAEIVGQYLKKGSSVYVEG
RLQTRKYTDKDGVEKYATDIIAEQMQMLGGRSGMGGDAGGGDDSYGGGGGGGGYDAPAPRQAPAPRPAPAPAPRPAPKPA
PNFSDMDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=592391 KY494_RS18905 WP_071075050.1 4217126..4217644(+) (ssb) [Janthinobacterium sp. PAMC25594]
ATGGCATCAGTCAACAAAGTCATCATCGTCGGCAATCTGGGCCGTGACCCGGAAATCCGCTACATGCCTAGCGGCGACGC
GATCGCCAACATCGCCGTGGCCACTTCGTACAAATCGAAGGACCGCAATACGGGCGAACAAAAAGAATTGACAGAGTGGC
ACCGTATCTCGTTCTTCGGCCGCCTGGCGGAAATCGTCGGCCAATACCTGAAAAAAGGCTCGTCCGTCTACGTCGAAGGC
CGTCTGCAAACCCGTAAATACACGGACAAGGACGGCGTCGAGAAGTACGCAACCGACATCATCGCGGAACAGATGCAAAT
GCTGGGCGGTCGCTCCGGCATGGGCGGCGACGCCGGCGGTGGCGATGACAGCTACGGCGGTGGTGGCGGTGGCGGCGGCT
ACGACGCCCCGGCCCCGCGCCAGGCGCCAGCCCCGCGTCCAGCTCCGGCCCCGGCACCACGCCCGGCACCGAAGCCAGCA
CCGAACTTCTCGGATATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y6RHB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

52.542

100

0.541
  ssb Neisseria meningitidis MC58

51.685

100

0.535
  ssb Vibrio cholerae strain A1552

50.838

100

0.529
  ssb Glaesserella parasuis strain SC1401

50

100

0.529