Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | PP4_RS02660 | Genome accession | NC_021505 |
| Coordinates | 596427..596978 (+) | Length | 183 a.a. |
| NCBI ID | WP_016497749.1 | Uniprot ID | A0A0Q4N073 |
| Organism | Pseudomonas putida NBRC 14164 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 591427..601978
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PP4_RS02645 (PP4_05150) | bfr | 591525..591989 (+) | 465 | WP_003255449.1 | bacterioferritin | - |
| PP4_RS02650 (PP4_05160) | uvrA | 592059..594893 (-) | 2835 | WP_016497747.1 | excinuclease ABC subunit UvrA | - |
| PP4_RS02655 (PP4_05170) | - | 595023..596417 (+) | 1395 | WP_016497748.1 | MFS transporter | - |
| PP4_RS02660 (PP4_05180) | ssb | 596427..596978 (+) | 552 | WP_016497749.1 | single-stranded DNA-binding protein | Machinery gene |
| PP4_RS02665 (PP4_05190) | - | 597180..598574 (-) | 1395 | WP_041167519.1 | PLP-dependent aminotransferase family protein | - |
| PP4_RS02670 (PP4_05200) | - | 598985..600010 (+) | 1026 | WP_016497751.1 | TauD/TfdA family dioxygenase | - |
| PP4_RS02675 (PP4_05210) | - | 600042..600827 (+) | 786 | WP_016484669.1 | TSUP family transporter | - |
| PP4_RS02680 (PP4_05220) | - | 600852..601613 (+) | 762 | WP_016497752.1 | SDR family NAD(P)-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 183 a.a. Molecular weight: 20301.40 Da Isoelectric Point: 5.9286
>NTDB_id=59239 PP4_RS02660 WP_016497749.1 596427..596978(+) (ssb) [Pseudomonas putida NBRC 14164]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYNQGGGQQQQYNQAPPRQQAQRPQQAPQR
PAPQQPAPQPAADFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYNQGGGQQQQYNQAPPRQQAQRPQQAPQR
PAPQQPAPQPAADFDSFDDDIPF
Nucleotide
Download Length: 552 bp
>NTDB_id=59239 PP4_RS02660 WP_016497749.1 596427..596978(+) (ssb) [Pseudomonas putida NBRC 14164]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAACAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATTGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTTGGCGGCCGTCCGCAAGGCCAGCAGCAAGGCGGCGACCCGTACAACCAGGGTGGCGGCAACTACAACC
AGGGTGGCGGCCAGCAGCAACAGTACAACCAGGCACCGCCTCGCCAGCAGGCCCAGCGTCCGCAACAGGCCCCTCAGCGC
CCAGCGCCCCAGCAGCCTGCACCGCAGCCGGCCGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAACAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATTGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTTGGCGGCCGTCCGCAAGGCCAGCAGCAAGGCGGCGACCCGTACAACCAGGGTGGCGGCAACTACAACC
AGGGTGGCGGCCAGCAGCAACAGTACAACCAGGCACCGCCTCGCCAGCAGGCCCAGCGTCCGCAACAGGCCCCTCAGCGC
CCAGCGCCCCAGCAGCCTGCACCGCAGCCGGCCGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
56.216 |
100 |
0.568 |
| ssb | Glaesserella parasuis strain SC1401 |
48.969 |
100 |
0.519 |
| ssb | Neisseria meningitidis MC58 |
48.108 |
100 |
0.486 |
| ssb | Neisseria gonorrhoeae MS11 |
48.108 |
100 |
0.486 |