Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KY493_RS03200 Genome accession   NZ_CP080376
Coordinates   660841..661335 (+) Length   164 a.a.
NCBI ID   WP_219897556.1    Uniprot ID   -
Organism   Brevundimonas sp. PAMC22021     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 655841..666335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KY493_RS03185 (KY493_03185) - 656841..659549 (+) 2709 WP_219897553.1 transcriptional regulator -
  KY493_RS03190 (KY493_03190) - 659608..660291 (+) 684 WP_219897554.1 hypothetical protein -
  KY493_RS03195 (KY493_03195) - 660298..660726 (+) 429 WP_219897555.1 hypothetical protein -
  KY493_RS03200 (KY493_03200) ssb 660841..661335 (+) 495 WP_219897556.1 single-stranded DNA-binding protein Machinery gene
  KY493_RS03205 (KY493_03205) - 661402..662316 (+) 915 WP_219897557.1 DMT family transporter -
  KY493_RS03210 (KY493_03210) - 662326..662880 (-) 555 WP_219897558.1 superoxide dismutase family protein -
  KY493_RS03215 (KY493_03215) gyrA 663001..665790 (+) 2790 WP_219897559.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17854.70 Da        Isoelectric Point: 5.9696

>NTDB_id=592373 KY493_RS03200 WP_219897556.1 660841..661335(+) (ssb) [Brevundimonas sp. PAMC22021]
MAGSVNKVILIGNLGRDPEIRSMPNGDRIANLSIATSETWRDKSSGERKEKTEWHRVVVFNDNIVKVVENYVKKGSTVYI
EGALQTRKWTDQQGVEKYSTEIVVSRFKGELTMLGGRGEGSGQGGGYGGGRGNDDDYSSGFSTGGANKPSGPRESYDLND
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=592373 KY493_RS03200 WP_219897556.1 660841..661335(+) (ssb) [Brevundimonas sp. PAMC22021]
ATGGCCGGCAGCGTCAACAAGGTCATCCTCATCGGCAATCTCGGGCGCGACCCCGAAATTCGTTCCATGCCTAACGGCGA
TCGCATCGCCAATCTTTCGATCGCCACCTCCGAGACCTGGCGCGACAAGTCCTCGGGCGAGCGCAAGGAAAAGACCGAGT
GGCACCGCGTCGTCGTCTTCAACGACAACATCGTCAAGGTGGTCGAGAACTACGTAAAGAAGGGCTCGACCGTCTACATC
GAAGGCGCGCTGCAGACGCGCAAATGGACCGATCAGCAGGGCGTCGAGAAATACTCCACCGAGATCGTCGTCAGCCGGTT
CAAGGGCGAACTGACCATGCTGGGCGGACGCGGTGAAGGCTCAGGCCAGGGTGGCGGTTATGGCGGCGGTCGCGGCAACG
ACGACGACTATTCGTCCGGCTTCTCCACCGGCGGCGCCAACAAGCCGTCCGGACCGCGCGAGAGCTACGACCTGAACGAC
GACATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.503

100

0.524
  ssb Vibrio cholerae strain A1552

49.711

100

0.524
  ssb Neisseria meningitidis MC58

40.556

100

0.445
  ssb Neisseria gonorrhoeae MS11

40.556

100

0.445