Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K0P33_RS28865 Genome accession   NZ_CP080330
Coordinates   6263174..6263701 (-) Length   175 a.a.
NCBI ID   WP_010467282.1    Uniprot ID   A0A6L5BQP5
Organism   Pseudomonas sp. ArH3a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6258174..6268701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0P33_RS28840 (K0P33_28740) - 6258419..6259174 (-) 756 WP_094953402.1 alpha/beta fold hydrolase -
  K0P33_RS28845 (K0P33_28745) - 6259164..6260273 (-) 1110 WP_242152960.1 DUF3182 family protein -
  K0P33_RS28850 (K0P33_28750) - 6260513..6261073 (+) 561 WP_094953400.1 cysteine hydrolase family protein -
  K0P33_RS28855 (K0P33_28755) tam 6261094..6261855 (-) 762 WP_242152964.1 trans-aconitate 2-methyltransferase -
  K0P33_RS28860 (K0P33_28760) - 6261959..6263062 (+) 1104 WP_094953398.1 hypothetical protein -
  K0P33_RS28865 (K0P33_28765) ssb 6263174..6263701 (-) 528 WP_010467282.1 single-stranded DNA-binding protein Machinery gene
  K0P33_RS28870 (K0P33_28770) - 6263711..6265105 (-) 1395 WP_242152967.1 MFS transporter -
  K0P33_RS28875 (K0P33_28775) uvrA 6265284..6268118 (+) 2835 WP_094950480.1 excinuclease ABC subunit UvrA -
  K0P33_RS28880 (K0P33_28780) bfr 6268184..6268648 (-) 465 WP_015886133.1 bacterioferritin -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19396.56 Da        Isoelectric Point: 5.9314

>NTDB_id=592198 K0P33_RS28865 WP_010467282.1 6263174..6263701(-) (ssb) [Pseudomonas sp. ArH3a]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRQAPPPQQAAP
QPAPDFDSFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=592198 K0P33_RS28865 WP_010467282.1 6263174..6263701(-) (ssb) [Pseudomonas sp. ArH3a]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTTGCAGAGATCGCCGGTGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGCAGGGCGACCAACAAGGCGGGGGCAATAACTACCAGCAGTCCGCTCCGGCCC
CACGCCAGCAGGCTCCGCGCCCGCAGCAGTCGGCACCGCAACAGTCGCGTCAGGCGCCGCCGCCACAACAGGCCGCTCCA
CAGCCGGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L5BQP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.065

100

0.6
  ssb Glaesserella parasuis strain SC1401

46.354

100

0.509
  ssb Neisseria meningitidis MC58

47.514

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.491