Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KZ312_RS03035 Genome accession   NZ_CP080260
Coordinates   665922..666458 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain 135     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 660922..671458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZ312_RS03015 (KZ312_03015) aphA 661210..661923 (+) 714 WP_059327782.1 acid phosphatase AphA -
  KZ312_RS03020 (KZ312_03020) yjbQ 662034..662450 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KZ312_RS03025 (KZ312_03025) yjbR 662454..662810 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  KZ312_RS03030 (KZ312_03030) uvrA 662845..665667 (-) 2823 WP_059327781.1 excinuclease ABC subunit UvrA -
  KZ312_RS03035 (KZ312_03035) ssb 665922..666458 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KZ312_RS03040 (KZ312_03040) yjcB 666557..666838 (-) 282 WP_001295689.1 YjcB family protein -
  KZ312_RS03045 (KZ312_03045) pdeC 667268..668851 (+) 1584 WP_072837432.1 c-di-GMP phosphodiesterase PdeC -
  KZ312_RS03050 (KZ312_03050) soxS 668857..669180 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  KZ312_RS03055 (KZ312_03055) soxR 669266..669730 (+) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=591784 KZ312_RS03035 WP_000168305.1 665922..666458(+) (ssb) [Escherichia coli strain 135]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=591784 KZ312_RS03035 WP_000168305.1 665922..666458(+) (ssb) [Escherichia coli strain 135]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489