Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   K6J63_RS04315 Genome accession   NZ_AP018765
Coordinates   820795..821802 (+) Length   335 a.a.
NCBI ID   WP_038440776.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-II-2 isolate 12H49     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 815795..826802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J63_RS04290 (CHBNII2_08280) aspS 816478..818244 (+) 1767 WP_011271986.1 aspartate--tRNA ligase -
  K6J63_RS04295 (CHBNII2_08290) nudB 818266..818739 (+) 474 WP_011271985.1 dihydroneopterin triphosphate diphosphatase -
  K6J63_RS04300 (CHBNII2_08300) - 818751..819491 (+) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  K6J63_RS04305 (CHBNII2_08310) ruvC 819538..820110 (+) 573 WP_011271984.1 crossover junction endodeoxyribonuclease RuvC -
  K6J63_RS04310 (CHBNII2_08320) ruvA 820173..820787 (+) 615 WP_038440774.1 Holliday junction branch migration protein RuvA -
  K6J63_RS04315 (CHBNII2_08330) ruvB 820795..821802 (+) 1008 WP_038440776.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  K6J63_RS04320 (CHBNII2_08340) - 821854..822141 (-) 288 WP_105892703.1 DUF5339 domain-containing protein -
  K6J63_RS04325 (CHBNII2_08350) xerD 822314..823207 (-) 894 WP_011271981.1 site-specific tyrosine recombinase XerD -
  K6J63_RS04330 (CHBNII2_08360) - 823238..824404 (-) 1167 WP_011271980.1 3-phenylpropionate MFS transporter -
  K6J63_RS04335 (CHBNII2_08370) proC 824404..825219 (-) 816 WP_038440778.1 pyrroline-5-carboxylate reductase -
  K6J63_RS04340 (CHBNII2_08380) rdgC 825285..826193 (+) 909 WP_050845967.1 recombination-associated protein RdgC -
  K6J63_RS04345 (CHBNII2_08390) ruvX 826243..826662 (-) 420 WP_005648994.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37090.44 Da        Isoelectric Point: 4.7793

>NTDB_id=59171 K6J63_RS04315 WP_038440776.1 820795..821802(+) (ruvB) [Haemophilus influenzae strain CHBN-II-2 isolate 12H49]
MIEADRIISGQAKLDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
IISINVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSQTYRHFGLQKLSD

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=59171 K6J63_RS04315 WP_038440776.1 820795..821802(+) (ruvB) [Haemophilus influenzae strain CHBN-II-2 isolate 12H49]
ATGATTGAAGCAGATAGAATTATTAGCGGGCAAGCTAAGCTTGATGAAGATGTTATCGACCGTGCTATTCGTCCTAAACT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTACGCGAGCAGATGGATATTTTCATCAAGGCAGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCTCCTGGCTTGGGAAAAACAACGCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACGACGTCAGGGCCTGTATTAGAAAAAGCGGGCGATTTGGCTGCAATGCTTACTAATCTTGAACCGCA
TGATGTGTTATTTATTGATGAAATCCATCGACTTTCCCCTGCTATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AGTTGGATATTATGATTGGCGAAGGACCCGCTGCTCGTTCCATTAAATTAGATTTGCCCCCTTTTACTTTGGTTGGTGCG
ACCACTAGAGCGGGTTCTTTGACTTCTCCATTGCGTGATCGTTTTGGTATTGTGCAACGTTTGGAATTCTATTCTGTAGA
AGATTTAACATCTATCGTTGCAAGAAGTGCGGACTGTTTAAATCTTGAATTAGAACAACAAGCCGCTTTTGAGGTGGCTC
GTCGTTCACGAGGCACGCCTCGAATTGCAAACCGTTTATTACGACGTGTGCGTGATTATGCAGATGTACGTAATGGCGGT
ATTATTTCTATAAATGTGGCAAAACAAGCGCTTTCAATGCTAGATGTAGACGATGCTGGATTTGATTATTTAGATAGAAA
GTTGTTGTCTGCAGTTATTGAGCGTTTTGATGGTGGCCCTGTGGGGCTAGATAATCTTGCTGCTGCAATTGGCGAAGAAC
GTGATACCATTGAAGATGTTTTAGAGCCTTATTTGATTCAACAGGGGTTTCTACAAAGAACGCCGCGTGGCCGTATTGCA
ACATCGCAAACTTATCGTCATTTTGGTTTGCAGAAATTATCAGACTAG

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

62.385

97.612

0.609
  ruvB Streptococcus pneumoniae TIGR4

57.975

97.313

0.564
  ruvB Streptococcus pneumoniae R6

57.975

97.313

0.564
  ruvB Streptococcus pneumoniae D39

57.975

97.313

0.564
  ruvB Helicobacter pylori 26695

54.633

93.433

0.51
  ruvB Synechocystis sp. PCC 6803

55.016

92.239

0.507

Multiple sequence alignment