Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KZW86_RS06720 Genome accession   NZ_CP080249
Coordinates   1328497..1329369 (+) Length   290 a.a.
NCBI ID   WP_234769171.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NV_1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1323497..1334369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZW86_RS06700 (KZW86_06650) sucC 1323611..1324777 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  KZW86_RS06705 (KZW86_06655) sucD 1324799..1325707 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  KZW86_RS06710 (KZW86_06660) - 1325934..1327052 (+) 1119 WP_001041666.1 LysM peptidoglycan-binding domain-containing protein -
  KZW86_RS06715 (KZW86_06665) fmhC 1327080..1328324 (+) 1245 WP_000672860.1 FemA/FemB family glycyltransferase FmhC -
  KZW86_RS06720 (KZW86_06670) dprA 1328497..1329369 (+) 873 WP_234769171.1 DNA-processing protein DprA Machinery gene
  KZW86_RS06725 (KZW86_06675) topA 1329543..1331618 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  KZW86_RS06730 (KZW86_06680) trmFO 1331774..1333081 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33526.98 Da        Isoelectric Point: 9.5093

>NTDB_id=591664 KZW86_RS06720 WP_234769171.1 1328497..1329369(+) (dprA) [Staphylococcus aureus strain NV_1]
MIKLFLLKLYWAHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENVLLLRKYYGFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=591664 KZW86_RS06720 WP_234769171.1 1328497..1329369(+) (dprA) [Staphylococcus aureus strain NV_1]
TTGATTAAACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCTTTTAT
TACGTAAATACTATGGTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

99.655

100

0.997
  dprA Staphylococcus aureus MW2

99.31

100

0.993
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

37.809

97.586

0.369
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

37.809

97.586

0.369
  dprA/cilB/dalA Streptococcus pneumoniae D39

37.809

97.586

0.369
  dprA/cilB/dalA Streptococcus pneumoniae R6

37.809

97.586

0.369
  dprA/cilB/dalA Streptococcus mitis SK321

37.456

97.586

0.366