Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KZX46_RS09690 Genome accession   NZ_CP080243
Coordinates   1217864..1218391 (-) Length   175 a.a.
NCBI ID   WP_219776407.1    Uniprot ID   -
Organism   Polymorphobacter sp. PAMC 29334     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1212864..1223391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZX46_RS09665 (KZX46_09650) - 1213197..1213619 (+) 423 WP_226896206.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  KZX46_RS09670 (KZX46_09655) gspI 1213616..1213981 (+) 366 WP_219776404.1 type II secretion system minor pseudopilin GspI -
  KZX46_RS09675 (KZX46_09660) - 1213978..1214787 (+) 810 WP_219776405.1 type II secretion system protein N -
  KZX46_RS09680 (KZX46_09665) gspD 1214799..1216937 (+) 2139 WP_226896207.1 type II secretion system secretin GspD -
  KZX46_RS09685 (KZX46_09670) - 1217331..1217855 (-) 525 WP_219776406.1 DUF1697 domain-containing protein -
  KZX46_RS09690 (KZX46_09675) ssb 1217864..1218391 (-) 528 WP_219776407.1 single-stranded DNA-binding protein Machinery gene
  KZX46_RS09695 (KZX46_09680) - 1218523..1219062 (-) 540 WP_219776408.1 GNAT family N-acetyltransferase -
  KZX46_RS09700 (KZX46_09685) - 1219148..1220452 (+) 1305 WP_219776409.1 DUF3667 domain-containing protein -
  KZX46_RS09705 (KZX46_09690) - 1220449..1222275 (-) 1827 WP_219776937.1 ferrous iron transporter B -
  KZX46_RS09710 (KZX46_09695) - 1222344..1222604 (-) 261 WP_219776410.1 FeoA family protein -
  KZX46_RS09715 (KZX46_09700) - 1222779..1223165 (+) 387 WP_219776411.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18291.10 Da        Isoelectric Point: 5.9787

>NTDB_id=591600 KZX46_RS09690 WP_219776407.1 1217864..1218391(-) (ssb) [Polymorphobacter sp. PAMC 29334]
MAGVNKVILVGRLGKDPETKEFGNGGRVVKFSLATSENWRDKGSGERKEKTEWHNIVIFNENIGKIASQYLKKGSEVYLE
GSLQTRKWQDQSGVEKYTTEVVLQNFNGNLTLLGGRDSGAGEGGGGAREGGGGGYGGGREQGGGGFGGGASPAAKKPAYP
GGGSFSDDLDDDVPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=591600 KZX46_RS09690 WP_219776407.1 1217864..1218391(-) (ssb) [Polymorphobacter sp. PAMC 29334]
ATGGCCGGTGTCAACAAAGTCATTCTCGTCGGACGCCTCGGCAAGGACCCCGAAACCAAGGAATTCGGCAACGGCGGGCG
GGTCGTCAAGTTCAGCCTCGCGACGTCCGAGAACTGGCGTGACAAGGGGTCGGGCGAGCGCAAGGAAAAGACCGAGTGGC
ATAACATTGTGATCTTCAACGAGAATATTGGCAAGATCGCCAGCCAGTATCTGAAAAAGGGCAGCGAGGTGTATCTCGAA
GGCTCGCTGCAGACGCGCAAATGGCAGGACCAGTCGGGGGTCGAGAAATACACCACCGAAGTCGTGCTGCAGAATTTCAA
CGGCAATCTTACCTTGCTCGGCGGGCGCGACAGCGGTGCCGGTGAGGGTGGCGGCGGCGCGCGTGAAGGCGGCGGCGGCG
GCTACGGCGGCGGACGCGAGCAGGGCGGCGGTGGCTTTGGCGGCGGGGCTTCCCCGGCGGCGAAAAAGCCCGCTTATCCG
GGCGGCGGCAGCTTCAGCGACGATCTCGACGACGACGTCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.032

100

0.497
  ssb Vibrio cholerae strain A1552

45.977

99.429

0.457
  ssb Neisseria gonorrhoeae MS11

40

100

0.423
  ssb Neisseria meningitidis MC58

39.459

100

0.417