Detailed information NTG0591585

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ITG12_RS14065
• Genome accession: NZ_CP080238
• Coordinates: 3000113..3000982 (-)
• Length: 289 a.a.
• NCBI ID: WP_038870483.1
• Uniprot ID: -
• Organism: Vibrio sp. ED002
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2995113..3005982

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ITG12_RS14030 (ITG12_13950)	rpsP	2996156..2996404 (+)	249	WP_005438039.1	30S ribosomal protein S16	-
ITG12_RS14035 (ITG12_13955)	rimM	2996431..2996979 (+)	549	WP_038870471.1	ribosome maturation factor RimM	-
ITG12_RS14040 (ITG12_13960)	trmD	2997007..2997750 (+)	744	WP_038870473.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
ITG12_RS14045 (ITG12_13965)	rplS	2997792..2998145 (+)	354	WP_038870475.1	50S ribosomal protein L19	-
ITG12_RS14050 (ITG12_13970)	yacG	2998471..2998665 (-)	195	WP_038870477.1	DNA gyrase inhibitor YacG	-
ITG12_RS14055 (ITG12_13975)	zapD	2998730..2999470 (-)	741	WP_038870479.1	cell division protein ZapD	-
ITG12_RS14060 (ITG12_13980)	coaE	2999498..3000112 (-)	615	WP_038870481.1	dephospho-CoA kinase	-
ITG12_RS14065 (ITG12_13985)	pilD	3000113..3000982 (-)	870	WP_038870483.1	A24 family peptidase	Machinery gene
ITG12_RS14070 (ITG12_13990)	pilC	3001054..3002277 (-)	1224	WP_038878900.1	type II secretion system F family protein	Machinery gene
ITG12_RS14075 (ITG12_13995)	pilB	3002309..3003994 (-)	1686	WP_038878901.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ITG12_RS14080 (ITG12_14000)	pilA	3003994..3004398 (-)	405	WP_038878904.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
ITG12_RS14085 (ITG12_14005)	nadC	3004663..3005550 (-)	888	WP_038878907.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32413.56 Da
• Isoelectric Point: 7.9246

>NTDB_id=591585 ITG12_RS14065 WP_038870483.1 3000113..3000982(-) (pilD) [Vibrio sp. ED002]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEAPKETLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCKSSISARYPLIELLTAFGSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALSGVSPVNLQDAIIGAMAGYLCLWSVYWVFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=591585 ITG12_RS14065 WP_038870483.1 3000113..3000982(-) (pilD) [Vibrio sp. ED002]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTGCCACAATTTTTGGTTTGATCGTGGGTAGTTTCCTCAA
CGTGGTTATTTACCGCTTACCCAAGATCATGGAACTAGAATGGCGACGCGAGTGCGCTGAATCATTCCCTGAATACAAAA
TTGAAGCACCGAAGGAAACACTGACCTTAAGTGTCCCTCGTTCTTCCTGCCAACAGTGCGGAACGCCGATCCGCATTCGT
GACAACATTCCTGTCATTAGCTGGCTGCTTCTGAAAGGAAAATGCCATAACTGTAAATCCTCGATTAGTGCTCGCTACCC
TCTCATCGAATTGCTTACTGCTTTTGGTTCGGGTTTTATCGCGTTTCACTTCGGTTTTAGTTACTTCACTGTTGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCCGCCACGTTTATCGACCTCGATACTATGTTGCTACCAGACCAACTAACGCTGCCA
TTAATGTGGGCAGGTATTGCACTTGCATTGTCTGGCGTTAGTCCTGTTAACCTGCAAGACGCCATCATTGGCGCGATGGC
TGGTTACTTGTGTCTTTGGAGTGTTTACTGGGTATTTAAGCTTCTGACTGGCAAAGAGGGCATGGGCTATGGTGACTTCA
AACTGCTTGCTGCCCTTGGTGCATGGTTAGGCTGGCAATCACTGCCGATGATCATTTTACTGTCGTCGGTTGTGGGCGTT
ATTTTCGGCCTGATACAACTGCGTTTACAAAAACAGGGTATCGAAAAAGCGTTCCCCTTTGGCCCTTACCTTGCGATTGC
AGGTTGGGTGAGCCTTATTTGGGGTAACCAGATTCTGAACTGGTACTTCACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	94.81	100	0.948
pilD	Vibrio cholerae strain A1552	74.653	99.654	0.744
pilD	Acinetobacter baumannii D1279779	51.079	96.194	0.491
pilD	Acinetobacter nosocomialis M2	50.719	96.194	0.488
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443