Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ITG12_RS06395 Genome accession   NZ_CP080238
Coordinates   1380244..1380543 (-) Length   99 a.a.
NCBI ID   WP_038865551.1    Uniprot ID   A0A2N7MZ80
Organism   Vibrio sp. ED002     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1375244..1385543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG12_RS06370 (ITG12_06290) - 1375666..1376880 (+) 1215 WP_005437583.1 pyridoxal phosphate-dependent aminotransferase -
  ITG12_RS06375 (ITG12_06295) yfbR 1376995..1377579 (+) 585 WP_038865545.1 5'-deoxynucleotidase -
  ITG12_RS06380 (ITG12_06300) - 1377583..1378917 (+) 1335 WP_042602167.1 anti-phage deoxyguanosine triphosphatase -
  ITG12_RS06385 (ITG12_06305) - 1378937..1379554 (-) 618 WP_038879423.1 DTW domain-containing protein -
  ITG12_RS06390 (ITG12_06310) rrtA 1379558..1380109 (+) 552 WP_038879420.1 rhombosortase -
  ITG12_RS06395 (ITG12_06315) comEA 1380244..1380543 (-) 300 WP_038865551.1 helix-hairpin-helix domain-containing protein Machinery gene
  ITG12_RS06400 (ITG12_06320) ppiD 1380689..1382548 (-) 1860 WP_038879417.1 peptidylprolyl isomerase -
  ITG12_RS06405 (ITG12_06325) - 1382763..1383035 (-) 273 WP_005430934.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10778.49 Da        Isoelectric Point: 6.9814

>NTDB_id=591558 ITG12_RS06395 WP_038865551.1 1380244..1380543(-) (comEA) [Vibrio sp. ED002]
MKWMLTLCLMLLAPVGWAAGGETTKSKSSKYEGIEITVNVNTASAEEIATLLNGIGEKKAEQIVEYREEHGPFKTAADLS
KVKGIGEATVKKNQERILL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=591558 ITG12_RS06395 WP_038865551.1 1380244..1380543(-) (comEA) [Vibrio sp. ED002]
ATGAAATGGATGTTAACGCTGTGCTTAATGCTATTGGCACCAGTGGGATGGGCGGCCGGCGGTGAGACAACAAAGTCGAA
ATCGTCGAAATACGAAGGTATTGAGATTACTGTTAATGTGAATACCGCTTCAGCGGAAGAGATCGCGACATTACTTAATG
GTATTGGCGAGAAGAAAGCCGAACAGATAGTAGAGTATCGTGAAGAGCACGGTCCATTCAAAACGGCAGCGGACCTAAGC
AAAGTGAAAGGCATTGGGGAAGCAACGGTGAAGAAAAACCAAGAGCGAATTTTGCTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7MZ80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio campbellii strain DS40M4

76.768

100

0.768
  comEA Vibrio parahaemolyticus RIMD 2210633

71.717

100

0.717
  comEA Vibrio cholerae C6706

56.566

100

0.566
  comEA Vibrio cholerae strain A1552

56.566

100

0.566