Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   ITG12_RS04305 Genome accession   NZ_CP080238
Coordinates   910987..911574 (-) Length   195 a.a.
NCBI ID   WP_038868704.1    Uniprot ID   A0A2N7N085
Organism   Vibrio sp. ED002     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 905987..916574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG12_RS04285 (ITG12_04210) - 906137..907399 (-) 1263 WP_248873731.1 DUF945 family protein -
  ITG12_RS04290 (ITG12_04215) - 907585..909525 (+) 1941 WP_248873733.1 ATP-binding protein -
  ITG12_RS04295 (ITG12_04220) - 909522..910019 (+) 498 WP_038868702.1 response regulator -
  ITG12_RS04300 (ITG12_04225) - 910227..910775 (+) 549 WP_038868703.1 hypothetical protein -
  ITG12_RS04305 (ITG12_04230) tfoX 910987..911574 (-) 588 WP_038868704.1 TfoX/Sxy family DNA transformation protein Regulator
  ITG12_RS04310 (ITG12_04235) - 911945..912865 (+) 921 WP_038874621.1 HDOD domain-containing protein -
  ITG12_RS04315 (ITG12_04240) - 912973..913878 (+) 906 WP_038868707.1 lysine exporter LysO family protein -
  ITG12_RS04320 (ITG12_04245) - 914087..914599 (+) 513 WP_005442243.1 hypothetical protein -
  ITG12_RS04325 (ITG12_04250) panP 914721..916367 (+) 1647 WP_038874619.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22295.53 Da        Isoelectric Point: 5.8420

>NTDB_id=591554 ITG12_RS04305 WP_038868704.1 910987..911574(-) (tfoX) [Vibrio sp. ED002]
MDMTDQAFFNYVSNFSEYQKRSMFGGIGLFSNDAMFALVSNDCCYLRGGDELDAEFTQLNCEKYKHVKKQTTATVNYYDV
TDLFDAGFAGLDTLLQKSIDCSIKERKYQKSSASRRLRDLPNMQLTLERMVKKAGIDDVETFLELGPVEVFNKVRVAYGS
DVDVKLLWKFAGAIDGVHWKLIQEPRKKQLLAMCE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=591554 ITG12_RS04305 WP_038868704.1 910987..911574(-) (tfoX) [Vibrio sp. ED002]
ATGGACATGACAGACCAAGCTTTTTTTAACTATGTAAGCAATTTTAGTGAGTATCAGAAACGTTCAATGTTCGGCGGCAT
TGGTTTATTTAGCAATGACGCTATGTTTGCTCTTGTAAGTAACGACTGTTGCTACTTGCGCGGCGGAGACGAACTCGACG
CAGAATTTACTCAACTTAACTGTGAAAAATATAAGCACGTCAAAAAACAAACGACGGCAACAGTTAACTACTATGACGTA
ACAGACTTATTCGATGCTGGCTTTGCTGGTCTTGATACGTTGTTACAAAAATCTATAGATTGTTCAATTAAGGAACGTAA
ATACCAAAAGTCCTCAGCCAGTAGACGCCTACGTGATCTGCCAAACATGCAACTGACGTTAGAACGTATGGTGAAAAAAG
CAGGAATCGATGACGTAGAGACGTTTTTGGAACTTGGCCCAGTGGAAGTATTCAATAAAGTAAGAGTTGCGTACGGCAGT
GATGTCGACGTGAAGCTTTTATGGAAATTTGCTGGTGCAATTGACGGCGTTCATTGGAAACTTATCCAAGAGCCACGTAA
AAAGCAGCTACTGGCAATGTGTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(11-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7N085

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

95.385

100

0.954
  tfoX Vibrio parahaemolyticus RIMD 2210633

91.795

100

0.918
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

69.43

98.974

0.687
  tfoX Vibrio cholerae strain A1552

69.43

98.974

0.687
  tfoX Aliivibrio fischeri ES114

59.686

97.949

0.585