Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L483_RS02470 Genome accession   NC_021491
Coordinates   533266..533814 (+) Length   182 a.a.
NCBI ID   WP_016484656.1    Uniprot ID   -
Organism   Pseudomonas putida H8234     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 528266..538814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L483_RS02455 (L483_02480) bfr 528360..528824 (+) 465 WP_003255449.1 bacterioferritin -
  L483_RS02460 (L483_02485) uvrA 528898..531732 (-) 2835 WP_016484654.1 excinuclease ABC subunit UvrA -
  L483_RS02465 (L483_02490) - 531862..533256 (+) 1395 WP_016484655.1 MFS transporter -
  L483_RS02470 (L483_02495) ssb 533266..533814 (+) 549 WP_016484656.1 single-stranded DNA-binding protein Machinery gene
  L483_RS02475 (L483_02500) - 533947..535233 (+) 1287 WP_016484657.1 tyrosine-type recombinase/integrase -
  L483_RS02480 (L483_02505) - 535226..536788 (+) 1563 WP_016484658.1 site-specific integrase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20213.33 Da        Isoelectric Point: 5.9286

>NTDB_id=59144 L483_RS02470 WP_016484656.1 533266..533814(+) (ssb) [Pseudomonas putida H8234]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYNQGGQPQQYNQAPPRQQAQRPQQAPQRP
APQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=59144 L483_RS02470 WP_016484656.1 533266..533814(+) (ssb) [Pseudomonas putida H8234]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAAT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTTGGCGGCCGTCCACAGGGTCAGCAGCAGGGCGGCGACCCGTACAACCAGGGTGGCGGCAACTACAACC
AGGGTGGCCAGCCCCAGCAATACAACCAGGCACCGCCTCGCCAACAGGCTCAGCGCCCGCAACAGGCCCCGCAGCGCCCG
GCGCCGCAACAGCCCGCGCCTCAGCCGGCTGCGGACTTTGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.219

100

0.588
  ssb Glaesserella parasuis strain SC1401

50

100

0.522
  ssb Neisseria meningitidis MC58

48.333

98.901

0.478
  ssb Neisseria gonorrhoeae MS11

48.333

98.901

0.478

Multiple sequence alignment