Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   KZR01_RS11060 Genome accession   NZ_CP080098
Coordinates   194877..195521 (+) Length   214 a.a.
NCBI ID   WP_009698824.1    Uniprot ID   A0A9X3RX18
Organism   Vibrio harveyi strain     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 183915..193940 194877..195521 flank 937


Gene organization within MGE regions


Location: 183915..195521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZR01_RS10995 - 183915..184124 (+) 210 WP_029854393.1 helix-turn-helix domain-containing protein -
  KZR01_RS11000 - 184327..185544 (+) 1218 WP_029854391.1 N-6 DNA methylase -
  KZR01_RS11005 - 185537..186505 (+) 969 WP_259556434.1 ATP-binding protein -
  KZR01_RS11010 - 186693..187265 (+) 573 WP_259556436.1 hypothetical protein -
  KZR01_RS11015 - 187275..188156 (+) 882 WP_049876773.1 hypothetical protein -
  KZR01_RS11020 - 188231..188398 (-) 168 WP_259556437.1 hypothetical protein -
  KZR01_RS11025 - 188395..188721 (-) 327 WP_259556438.1 hypothetical protein -
  KZR01_RS11030 - 188721..190892 (-) 2172 WP_259556439.1 hypothetical protein -
  KZR01_RS11035 - 190940..191833 (-) 894 WP_259556440.1 tyrosine-type recombinase/integrase -
  KZR01_RS11040 - 191790..192359 (-) 570 WP_259556441.1 hypothetical protein -
  KZR01_RS11045 - 192541..192876 (-) 336 WP_259556442.1 hypothetical protein -
  KZR01_RS11050 - 192897..193940 (-) 1044 WP_259556443.1 site-specific integrase -
  KZR01_RS11055 ssb 194043..194582 (-) 540 WP_005444320.1 single-stranded DNA-binding protein Machinery gene
  KZR01_RS11060 qstR 194877..195521 (+) 645 WP_009698824.1 LuxR C-terminal-related transcriptional regulator Regulator

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24591.43 Da        Isoelectric Point: 8.7703

>NTDB_id=591062 KZR01_RS11060 WP_009698824.1 194877..195521(+) (qstR) [Vibrio harveyi strain]
MKKSAYARKLFLISMEDDAEKKVEALVKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKTLVQSIKNLPLIWKNFET
VIFNVPKRLTTDELLSFGQLKGVFYQEDSLEQVGEGLREIVNGQNWLPRNVTSQLLHYYRNVLSTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLLS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=591062 KZR01_RS11060 WP_009698824.1 194877..195521(+) (qstR) [Vibrio harveyi strain]
GTGAAAAAATCAGCTTATGCGAGAAAATTGTTTTTGATCAGTATGGAAGACGACGCAGAGAAAAAAGTCGAAGCGCTCGT
GAAATACACTGATATTGATATCCCTGTCATCTCCACACAAGCACTGATGGAAGCCAATCCAAAGCATCGCAATAAAATCC
TGTTGATTGACTTTAGTGAACATAAAACACTCGTACAATCGATCAAAAACTTGCCTTTAATTTGGAAGAATTTTGAAACG
GTCATATTCAATGTTCCTAAACGCTTAACCACCGATGAGTTGTTGTCTTTTGGGCAACTAAAAGGCGTATTTTATCAGGA
AGACTCTCTAGAGCAGGTAGGTGAAGGCTTGAGAGAAATCGTGAATGGTCAGAACTGGTTGCCAAGAAATGTCACTAGTC
AATTGCTTCACTATTATCGCAATGTCCTCAGCACGCACACCGCCCCAGCAACCGTGGACTTAACCATCCGTGAGTTGCAA
GTTTTACGTTGTCTTCAGGCAGGAGCATCTAACAATCAAATGGCAGAAGAATTGTTCGTCAGTGAATTCACCATTAAATC
TCACCTTTATCAGATATTCAAAAAGCTCTCCGTAAAGAATCGCGTTCAAGCTATCGCTTGGGCAGACCAAAACTTGTTGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

92.991

100

0.93
  qstR Vibrio parahaemolyticus RIMD 2210633

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.336

100

0.523