Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KZR01_RS11055 Genome accession   NZ_CP080098
Coordinates   194043..194582 (-) Length   179 a.a.
NCBI ID   WP_005444320.1    Uniprot ID   -
Organism   Vibrio harveyi strain     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 183915..193940 194043..194582 flank 103


Gene organization within MGE regions


Location: 183915..194582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZR01_RS10995 - 183915..184124 (+) 210 WP_029854393.1 helix-turn-helix domain-containing protein -
  KZR01_RS11000 - 184327..185544 (+) 1218 WP_029854391.1 N-6 DNA methylase -
  KZR01_RS11005 - 185537..186505 (+) 969 WP_259556434.1 ATP-binding protein -
  KZR01_RS11010 - 186693..187265 (+) 573 WP_259556436.1 hypothetical protein -
  KZR01_RS11015 - 187275..188156 (+) 882 WP_049876773.1 hypothetical protein -
  KZR01_RS11020 - 188231..188398 (-) 168 WP_259556437.1 hypothetical protein -
  KZR01_RS11025 - 188395..188721 (-) 327 WP_259556438.1 hypothetical protein -
  KZR01_RS11030 - 188721..190892 (-) 2172 WP_259556439.1 hypothetical protein -
  KZR01_RS11035 - 190940..191833 (-) 894 WP_259556440.1 tyrosine-type recombinase/integrase -
  KZR01_RS11040 - 191790..192359 (-) 570 WP_259556441.1 hypothetical protein -
  KZR01_RS11045 - 192541..192876 (-) 336 WP_259556442.1 hypothetical protein -
  KZR01_RS11050 - 192897..193940 (-) 1044 WP_259556443.1 site-specific integrase -
  KZR01_RS11055 ssb 194043..194582 (-) 540 WP_005444320.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19933.98 Da        Isoelectric Point: 4.9269

>NTDB_id=591061 KZR01_RS11055 WP_005444320.1 194043..194582(-) (ssb) [Vibrio harveyi strain]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQQQQQQGGWGQPQQPAQQQQYNAPQQQQQQAPQ
QQQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=591061 KZR01_RS11055 WP_005444320.1 194043..194582(-) (ssb) [Vibrio harveyi strain]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTATTCGGCAAGCTTGCTGAAGTAGCGGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGTCAAGATCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGCTCCAATGGGTGGCGGTCAACAACAGCAGCAACAAG
GCGGCTGGGGTCAACCTCAACAACCGGCTCAACAGCAGCAATACAACGCTCCTCAGCAACAGCAACAACAGGCTCCGCAG
CAACAACAGCCGCAATATAACGAGCCGCCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.319

100

0.827
  ssb Glaesserella parasuis strain SC1401

56.452

100

0.587
  ssb Neisseria meningitidis MC58

46.629

99.441

0.464
  ssb Neisseria gonorrhoeae MS11

46.629

99.441

0.464